Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02336 ATGGATCTTCCAGAAACATCACTATGGTGGACTCAACAACAAAACCAACAACATCAACAACAACAACAAACTATGTTATTACTTGAACCAATTCAAAACAATACTTCTTGGTCTCTCCATCACCAACAACCCACATGGTTCAACCAAAACATGGAAGATGAAGAATTACATAACAACAACAACAACAATACCACCACGACAACTGAAATAAAAACCGAAGACGAAAAAGAACCAATGTTCGAGAAACCATTGACACCATCTGACGTAGGAAAACTAAACCGTCTAGTTATACCAAAACAATACGCCGAAAAATACTTCCCACTCGGCGGAGTCAGTGACTCCGCCGAGTGCAAAGGGTTGTTACTTAGTTTCGAGGATGAGTTAGGAAAGTGTTGGCGATTTCGTTACTCTTATTGGAACAGTAGTCAAAGTTATGTTTTAACTAAAGGTTGGAGTCGTTATGTTAAGGATAAACGTCTTGATGCTGGTGACGTTGTTTTGTTTGAACGACACCGTTTTGATAGTCAGAGACTTTTTATCAACTGGAGGAGGAGGAGATTGAATGGTGGTGATGAACAGTCGGCGTATGTTAGTAGAGCGGTGGTGGGACATGGTGGTAATGGGGGTGGGAATAGTAAAAATGAGGTTGTTAATGTTAGTGGTTTGGGTGTTGGGTGGTCCAGAGGTTACTATTCTGCGCATGTTCCTTATCCTGCGCATCATCAGGTTTTGCCGTATCAACATGATCACTGTCTTCATGCAGGTAGAGGGTCCCAAAGTCAGAACCAAAGGACAAAACCAGTGGGAAATAGTTCTAGTTCAAGTTCTAGTTCAAGGGTACTTAGGTTGTTTGGTGTTAACATGGAATGCCAACCAGAACAACATGATTCTTCTACACCTCAATGTTCTTATGATAGTAATAATATGCCATTAACACAAAGTACTACTTTAGATAATAGCCATAATCTCTACCAACCTAATTCTTCTCATTCTAATATGGTACGTCACCAACCATATTACTACTAG 1026 0.4016 MDLPETSLWWTQQQNQQHQQQQQTMLLLEPIQNNTSWSLHHQQPTWFNQNMEDEELHNNNNNNTTTTTEIKTEDEKEPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGVSDSAECKGLLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRFDSQRLFINWRRRRLNGGDEQSAYVSRAVVGHGGNGGGNSKNEVVNVSGLGVGWSRGYYSAHVPYPAHHQVLPYQHDHCLHAGRGSQSQNQRTKPVGNSSSSSSSSRVLRLFGVNMECQPEQHDSSTPQCSYDSNNMPLTQSTTLDNSHNLYQPNSSHSNMVRHQPYYY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02336 341 CDD B3_DNA 78 176 IPR003340 GO:0003677
Trre1g02336 341 MobiDBLite consensus disorder prediction 291 341 - -
Trre1g02336 341 MobiDBLite consensus disorder prediction 252 278 - -
Trre1g02336 341 MobiDBLite consensus disorder prediction 291 335 - -
Trre1g02336 341 MobiDBLite consensus disorder prediction 254 278 - -
Trre1g02336 341 SMART B3_2 80 186 IPR003340 GO:0003677
Trre1g02336 341 SUPERFAMILY DNA-binding pseudobarrel domain 75 184 IPR015300 -
Trre1g02336 341 Pfam B3 DNA binding domain 80 185 IPR003340 GO:0003677
Trre1g02336 341 Gene3D - 68 195 IPR015300 -
Trre1g02336 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 14 300 IPR044800 GO:0003700
Trre1g02336 341 ProSiteProfiles B3 DNA-binding domain profile. 80 186 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02336 Trre-Chr1 18799017 18801443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02336 73 296 RAV Transcription Factor Family AT5G06250 51.293 1.60e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g02336 B3 3.6e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02336 K09287 - gmx:100795470 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02336 1 18799017 18801443 Trre1g02336 1 18799017 18801443 ECH
Trre13g04511 13 52622708 52624754 Trre1g02336 1 18799017 18801443 PCT