Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02335 ATGTCTCTACTCACCCAAAAACTTCTCTTGATGTGTGTGTTGTTGCTGGTATCAGCGAACAATGTTCTTGGAGAGTCTGAAAATTGTTTTCTTACAGATCATATGACCGTGAATATTACAAATACTTTGTCTGGAAATTTAGACTTAACCATTCATTGCAAATCTAAAGAAGATGATCTTGGAGAACATCTTCTTCATCATGGTGAGAGTTTTACTTGGAGATTTTGTAATAGGTTAATTGGTTCAACACTATACTACTGTTCCTTTAGATGGAATAGTGAGTTACATTGGTACAATGCATACGATGAAGCTAGGGATCTTTATCATTGTCATCCTAATAAGCATTGTATTTATCTTGTAAAACAATCTGGACCTTGTAAAATGATAGATTACGATGAAAGTCATGCTTTTTGCTATCCATGGAAGCAGTGA 432 0.3449 MSLLTQKLLLMCVLLLVSANNVLGESENCFLTDHMTVNITNTLSGNLDLTIHCKSKEDDLGEHLLHHGESFTWRFCNRLIGSTLYYCSFRWNSELHWYNAYDEARDLYHCHPNKHCIYLVKQSGPCKMIDYDESHAFCYPWKQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02335 143 Pfam Plant self-incompatibility protein S1 36 141 IPR010264 -
Trre1g02335 143 PANTHER - 32 127 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02335 Trre-Chr1 18772688 18773119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02335 11 141 Carbohydrate Esterase AT3G16970 32.593 1.72e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02335 - - tpra:123904838 146.362