Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02334 ATGGGTCGTGTCAGAACCAAAACCGTGAAAAAATCTTCACGTCAAGTCATTGAACGTTACTACTCACGTATGACCTTAGATTTCCACACCAACAAAAAAATCCTTGAAGAAGTTGCACTGATTCCATCGAAGAGACTCCGCAACAAAATCGCTGGATTTTCAACTCATCTGATGAAACGTATTCAGAAAGGACCTGTTCGTGGAATTTCATTGAAGTTACAAGAAGAAGAACGTGAACGTCGTATGGATTTCGTTCCTGATGTTTCTGCTATTAGGACTGATCATATTGAGGTTGATAAGGAAACTTTGGATATGATTGCTGCTCTTGGTATGTCGGAGCTTCCTGGTGTTGTTCAGGTTGATCCTGTTCCTGTTCAGCAGATTCCGTTTGGTCGTGGTGCTGGTGGTGCTGGTGCTGGAAGAAGGTTTTGA 432 0.4259 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIEVDKETLDMIAALGMSELPGVVQVDPVPVQQIPFGRGAGGAGAGRRF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02334 143 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Trre1g02334 143 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Trre1g02334 143 PANTHER 40S RIBOSOMAL PROTEIN S17 1 123 IPR001210 GO:0003735|GO:0005840|GO:0006412
Trre1g02334 143 FunFam 40S ribosomal protein S17 1 62 - -
Trre1g02334 143 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Trre1g02334 143 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Trre1g02334 143 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02334 Trre-Chr1 18762543 18762974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02334 1 143 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 79.021 4.97e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02334 K02962 - gmx:100819067 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02334 1 18762543 18762974 Trre1g02334 1 18762543 18762974 ECH