Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02325 ATGTTGAAAAAATTGAAGTTTCTTTCTCTTTTCAAAAACACAGATGGAAAATCCTCTTCATCATGGACTTGGCCATCTTGCAACCAACCAAAAACTCTTTCTTTTAGAGCCAACAAAAATGACACCGTACTCGAATCCATTAACCCGACTTTTGTAAACTCCTCCACCAACAAAGAGATTCTAGAAACTTTTGAATCTATATTAACTGAATTTTCTTATGAGGATTTCAAAGAAAGTGGTTTGTGTTCGGATCGATTTTTCTTTGAACCGAACGAAACAAGCTCAATATTAAAGATCAAAGACATAATTAATGTTTCGTCTAATGGAACAGTAAGCAACAACATTAATAGCATAGTATTACCATTCGAAAACACCGTTGAGTTTCCGATGGATTCGCAAAATCCTTACGAAGATTTCAAAGAATCGATTGTGGAAATGGTTAAGGCTCATGGCGTTAACAATTGGGAAACTTTGGAAAAGCTTTTGAGTTGGTATTTGGAAGTTAATGAGAAAAGCAATTATGGATTTATTATTGATGCTTTTTTTGATTTAGTTGTTGAATTTAATCATGATTCACCAGATTGTTCTCCTTTATCGATTCAGAGTTGTTCTTCTCTTGATTCTTTGTGGAGCATACCTTGTGTTTCATCTTATAGTTCACCTTTGTAA 669 0.3363 MLKKLKFLSLFKNTDGKSSSSWTWPSCNQPKTLSFRANKNDTVLESINPTFVNSSTNKEILETFESILTEFSYEDFKESGLCSDRFFFEPNETSSILKIKDIINVSSNGTVSNNINSIVLPFENTVEFPMDSQNPYEDFKESIVEMVKAHGVNNWETLEKLLSWYLEVNEKSNYGFIIDAFFDLVVEFNHDSPDCSPLSIQSCSSLDSLWSIPCVSSYSSPL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02325 222 NCBIfam uncharacterized plant-specific domain TIGR01568 129 187 IPR006458 -
Trre1g02325 222 ProSiteProfiles OVATE domain profile. 128 187 IPR006458 -
Trre1g02325 222 Pfam Transcriptional repressor, ovate 132 187 IPR006458 -
Trre1g02325 222 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 55 187 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02325 Trre-Chr1 18682994 18683662 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre1g02325 Ovate 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02325 - - mtr:25483754 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02325 1 18682994 18683662 Trre1g06063 1 64886967 64887713 ECH
Trre1g02325 1 18682994 18683662 Trre1g02325 1 18682994 18683662 ECH
Trre13g04525 13 52780544 52781452 Trre1g02325 1 18682994 18683662 PCT