Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02312 ATGGCGACAAAATCCTACCCCCGACAACGCAGTGACAATGACGACGGTTGCTGCTGCAGCAGATGTCTCTGCGGCTGTTTCAACTGCTGCTGCAGATGTCTCTGCAGCTGTATTGCCTACTTTTTCAACTACATCTTAAGCATAATCTGCAACATCATCGTTGCCGTAGTAATATTCGCGGTTCTCTTCTGGCTTATCGTTCGTCCAAACTACATCAAATTCACTACAACTGATGCATCCCTTACTCAATTTAATTTCAGAAACAACAACACACTTCACTATGATATTTCCATCTACACCGCGATCAGAAACCCTAATCGAAGAGTTGGTATCTACTACGATAACATCGAAATGCTTGCATTTTATAAGGATGTTAGGTTTGGTTCTAAAACTTTTGGAAAATTCTTTCAGAGTCATAAGAATACGAGTTTCTTGAACGCGGTTTTTAGAGGTCAGCAAGTGATTCCTTTAAATTCTGATCAGATTTGGCAACTGAATAAAGAGAAGAGAAATGGAGTTTATCAAATTGTTGTGAAGGTTTTGATTAAAGCAAGGTTTAAATTTGGTATGTTCCAAACATGGGAAGGGAATCCTAAGGTTAGTTGTGATTTGCAGGTTTCTTTAAAATCGGGCGGTGAAATTCCGTTAGGTAATGAATTTCTAGCCACTAATTGTGATTGGGATGACAAATGGTGGTTCTTCCGTTAG 708 0.3941 MATKSYPRQRSDNDDGCCCSRCLCGCFNCCCRCLCSCIAYFFNYILSIICNIIVAVVIFAVLFWLIVRPNYIKFTTTDASLTQFNFRNNNTLHYDISIYTAIRNPNRRVGIYYDNIEMLAFYKDVRFGSKTFGKFFQSHKNTSFLNAVFRGQQVIPLNSDQIWQLNKEKRNGVYQIVVKVLIKARFKFGMFQTWEGNPKVSCDLQVSLKSGGEIPLGNEFLATNCDWDDKWWFFR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02312 235 Pfam Late embryogenesis abundant protein 101 202 IPR004864 -
Trre1g02312 235 PANTHER OS05G0367900 PROTEIN 30 209 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02312 Trre-Chr1 18549872 18550579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02312 66 217 SNARE and Associated Proteins AT1G32270 34.868 6.50e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02312 - - tpra:123896029 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02312 1 18549872 18550579 Trre1g02312 1 18549872 18550579 ECH
Trre13g04545 13 52894690 52895414 Trre1g02312 1 18549872 18550579 PCT