Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02311 ATGGCCGGTAACCAACTCAACGGCGCTTACTACGGCCCATCAATTCCACCGCCGCAACAAAAACCCTACCGCCGCCACCACAACGACGACGGCTGCGGCTTCTGCAGCTGTCTCTGCGGCTGTTTCAGAGGCTGTTGTGGCTGCATCTTCAACTGCATCTTAAGCATAATCTGCAAAATCCTAACCACAATCATCATCATAATCGTGATTCTCGGTTTCCTCTTCTGGCTCATCGTTCGACCTAACGTCGTCAATTTCACCGTCACTGATGCATCTCTTACTCAATTCAATTTCACCAACAACAACACACTTCACTACGATCTTGCCGTTAACATCACGATCCGAAACCCTAATCGAAGAGTTGGTATCTATTACGATAACATCGAAACGCTTGCGTTGTATAAAGATGTTCGATTTGGTTCACAAACTTTAGGTCAATTCTTTCAGCATCATAAGAATACGAGTTTCTTGAACCCTAATTTCAAAGGTCAACAAGTTGTTCCTTTGAATTCAGATCAGATTTCAGAGTTTGAAAACGAAAAGAAAGATGGAGTTTTTGATATTGATGTGAAGCTTTTGCTTAATGTTAGGTTTAAATTGGGTTTGTTTAAGAGTGGTAAAGCGAAACCTAAGGTTCATTGTGATTTGAAGATTCCTCTGAAATCAAGTAATGGAAAATTATTGGGTAATGGGTTTGAAGCTACTGATTGTGATTGGGATTATAAATGGAAGTTGTTCCATTAG 744 0.4099 MAGNQLNGAYYGPSIPPPQQKPYRRHHNDDGCGFCSCLCGCFRGCCGCIFNCILSIICKILTTIIIIIVILGFLFWLIVRPNVVNFTVTDASLTQFNFTNNNTLHYDLAVNITIRNPNRRVGIYYDNIETLALYKDVRFGSQTLGQFFQHHKNTSFLNPNFKGQQVVPLNSDQISEFENEKKDGVFDIDVKLLLNVRFKLGLFKSGKAKPKVHCDLKIPLKSSNGKLLGNGFEATDCDWDYKWKLFH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02311 247 Pfam Late embryogenesis abundant protein 111 212 IPR004864 -
Trre1g02311 247 PANTHER OS05G0367900 PROTEIN 56 223 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02311 Trre-Chr1 18530140 18530883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02311 78 225 SNARE and Associated Proteins AT1G32270 41.333 1.09e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02311 - - aprc:113873272 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04546 13 52897920 52899974 Trre1g02311 1 18530140 18530883 PCT