Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02310 ATGGCGCAAGCACAACCCCGTAATTGTTGTAGACGATGTTGTTGTTGCCTATTTGGTGTAATTTGGAAGCTCGTCGTAGCAATAATCGTCCTCATAGTTCTCGCAATTTTCATTGTCTTTTTCATTGTTCAACCCCGCTCATTCAAATTCAGTGTCAAAGAAGCCAAACTAACCGAATTCAACTACAATAAAAACACCCTCCGTTACAACCTTGTGCTCAATTTCACGGCCCATAACCCAAACAAAAAACTCGGCGTCATCTATGATTATATGGAGGGACATGTCTCCTATGAAGGAATTAGGTTTGCTTCAACGAATATTAGTGGTATTTTTTTCCGTCAAGACGCCAAAAAGACAGATCGTATGAGCGGTGTTTTCTCTGGACAACATGTTATGGCTTTTGATCATGATCAAGTTTCTGACTTTGAACGTGATAAGAAAGATGAAGTTTTTCATATTGATGTGAAGTTGTACTATAGGATCAGGTTTAAGCTTGGTGATTTTACTTTTAATGATGATATTAAAGGTAACATTAAATGTGGTCTTGATGTTCCTTTTGGATCTATTAATGGGACTAAGGTCATGAATGCATTTGAACCCACCACGTGCGATGTTAATTTGTGA 624 0.3798 MAQAQPRNCCRRCCCCLFGVIWKLVVAIIVLIVLAIFIVFFIVQPRSFKFSVKEAKLTEFNYNKNTLRYNLVLNFTAHNPNKKLGVIYDYMEGHVSYEGIRFASTNISGIFFRQDAKKTDRMSGVFSGQHVMAFDHDQVSDFERDKKDEVFHIDVKLYYRIRFKLGDFTFNDDIKGNIKCGLDVPFGSINGTKVMNAFEPTTCDVNL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02310 207 Pfam Late embryogenesis abundant protein 75 168 IPR004864 -
Trre1g02310 207 PANTHER OS05G0367900 PROTEIN 9 184 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02310 Trre-Chr1 18525800 18526423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02310 42 192 SNARE and Associated Proteins AT1G32270 31.613 7.50e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02310 - - tpra:123903297 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04547 13 52899572 52903392 Trre1g02310 1 18525800 18526423 PCT