Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02299 ATGGGAATTCCTCAAGCCATGGTTGCTCTTAAAGAAAGAGCAGCGTTCGTAAAAGATTCGCTTCATAGAAGCCAAACAATTACCGATAACATGGTTTCGATTCTTGGTTCCTTCGATCATCGTCTCTCTGCTCTTGAAACCGCAATGCGTCCTACTCAGATAAAAACGCATTCGATTCGAAGTGCTCATGATAATATTGATAAGACTTTAAAAGCTGCGGAGGTGATTTTGACGCAATTTGATCAGACACGAAAGGCGGAGGCTAAAATACTGCGAGGGCCACATGAGGATCTAGAAAGCTATTTGGAAGCAGTTGATCAGCTTAGAGCTAATGTTCGCTTCTTCAGCAGCAAAAAGAGTTTCAAAAGCAGTGAAGGTGTCATCAACCATGCAAACAATTTGCTTGCTAAAGCTATCTTAAAGCTTGAAGATGAATTTAAACATCTTTTGACAAATTACAGCAAGCCGGTGGAACCTGATCGCCTTTTTGACTGCTTACCGAACTCTCTAAGGCCATCAGCTGCTGGGCAGCAGAATGGTGGCGGCGGTAAAAACCATTCAGAAAAACAAAGCGGAGATACTGTCACTTTCACTCTCCCAACTCTTATTCCCCCCAGAGTTTTACCATTGCTTCATGAATTAGCAATACAAATGGTTCAAGCGGGACATCAACAGCAGCTCTTTCGAGTCTATACAGACACTCGTTCTGCAGTCCTGGAGCAGAGTCTAAAAAAGTTAGGTGTAGAGAGGCTGAGTAAGGATGATGTTCAAAAAATGCAATGGGAGGTTTTGGAGGCTAAGATTGGAAATTGGATTCATTACATGAGGATTTCTGTCAAGTTGTTGATTGTCGGGGAAAAAAAAATCTGTGATCAAATCTTTGATGGTGTTGATTCTGTGAAAACTCAATGCTTTGCTGAAGTCACTGGTAGCAGTGTAGCTATGCTGCTTAGTTTTGGAGAGGCTATTGCCAGAAGCAAGAGGTCACCTGAAAAATTATTTGTTCTTCTCGACATGTATGAGATAATGAGAGAACTTCAACCAGAGATTGAGACACTGTTTGATAGTAAAGTTTGCTCTGAAATGCGGGAAGCTGCAATCAGTTTGACAAAGCGACTTGCTCAGACAGCACAAGAAACCTTTGGTGACTTTGAGGAAGCAGTTGAAAAAGATGCTACTAAAACTGCCGTGCAAGATGGAACTGTCCACCCTCTAACCAGCTATGTTATCAATTACGTGAAATTTCTCTATGATTACCAAGCAACTCTGAAACAACTTTTTCAAGAGTTTGATCCTGGCGACCCAGAATCTCAATTAGCATCTGTTACAACAAGGATTATGCAGGCTCTCCAGAATAACCTAGATGGAAAGTCTAAACTGTATAAAGACCCAGGACTAACCCAGTTATTTCTTATGAACAATATCCATTACATAGTGAGATCTGTGAGAAGGTCAGAGGCAAAGGATATGTTGGGGGATGACTGGGTACAAATACACAGAAGAATTGTGCAACAGCATGCAAACCAGTATAAAAGGATCTCTTGGGCAAAGATCTTGCAGTGCCTCACTGTCCAAGGAACTAATTCATCTGGTGGAGGGGACAGCGGTGGACTTTCAAGAACAGCGGTCAAAGATAGGTTCAAGACATTTAACAGTCAATTTGAGGAGCTTCATCAGAGACAATCTCAGTGGACTGTTCCTGATAGTGAGTTGCGCGAATCACTTAGACTGGCTGTTGCTGAAGTTTTGTTACCTGCCTATAGATCTTTCCTTAAACGTTTTGGGCCCATGATTGAGAATGGCAAAAATCCTCAAAAGTATATCAGATACTCTCCCGAGAATCTTGAACAAATGCTCGGTGAGTTTTTCGAAAGCAAGGCGTGGAGCGAACAGAAGCGGTGA 1902 0.4206 MGIPQAMVALKERAAFVKDSLHRSQTITDNMVSILGSFDHRLSALETAMRPTQIKTHSIRSAHDNIDKTLKAAEVILTQFDQTRKAEAKILRGPHEDLESYLEAVDQLRANVRFFSSKKSFKSSEGVINHANNLLAKAILKLEDEFKHLLTNYSKPVEPDRLFDCLPNSLRPSAAGQQNGGGGKNHSEKQSGDTVTFTLPTLIPPRVLPLLHELAIQMVQAGHQQQLFRVYTDTRSAVLEQSLKKLGVERLSKDDVQKMQWEVLEAKIGNWIHYMRISVKLLIVGEKKICDQIFDGVDSVKTQCFAEVTGSSVAMLLSFGEAIARSKRSPEKLFVLLDMYEIMRELQPEIETLFDSKVCSEMREAAISLTKRLAQTAQETFGDFEEAVEKDATKTAVQDGTVHPLTSYVINYVKFLYDYQATLKQLFQEFDPGDPESQLASVTTRIMQALQNNLDGKSKLYKDPGLTQLFLMNNIHYIVRSVRRSEAKDMLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQGTNSSGGGDSGGLSRTAVKDRFKTFNSQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFLKRFGPMIENGKNPQKYIRYSPENLEQMLGEFFESKAWSEQKR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02299 633 Pfam Exo70 exocyst complex subunit 270 620 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g02299 633 SUPERFAMILY Cullin repeat-like 76 624 IPR016159 -
Trre1g02299 633 Gene3D Exocyst complex component Exo70 74 633 - -
Trre1g02299 633 MobiDBLite consensus disorder prediction 173 192 - -
Trre1g02299 633 PANTHER EXOCYST COMPLEX PROTEIN EXO70 57 624 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02299 Trre-Chr1 18452733 18458809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02299 1 633 EXO70 exocyst subunit family AT5G52340 79.147 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02299 K07195 - gmx:100779774 1085.86