Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02295 ATGAAAGATCCTGTTACTGCTATAACAGGTATAACATATGATAGAGACAGCATTGAACATTGGTTATTCAGAAACAAAAACATAACATGTCCTGTTACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCATACACTTCGTCGTTTGATTCAATCTTGGTGTACACAAAATGCTTCACTTGGTATTGATAGAATTCCAACACCAAAACCACCACTTACAAAAACTCATGTTCAAAAACTTGTTAAAGAGATGAAAGATTCAAAGTTTCAGCTCAAGAGTTTAATGCAGTTGGAATTACTTGCTGCAGAGAATGAAAGGAATAGAAAGTGTTTGTTGGAAAACGGCGTGCCGAGATCGATGATTATGTTCTTAGTTGATTGTTATAAAAAAGGTGAAATTCTTGAAGGTATTGAAGAAGCTCTTAGTTTTTTACAATTTGTTAAGGTTCCAACAGAGGAAGTGAAGAATCTTTTATCTGAAAATGATCAAATAGTGGATTCTTTAATATGGATTTTATCTTCAGATATGAAAAACTCTGTTGCAGTGAAATCTCATGCTGTTATGGTTCTTAAAAAATTCATAAACAAATGTGATTCCATTCTTTTAGAGAGACTAAAACCCGATTTTTTCGATAAGATCGTAAAAATCTTAAAATATGGTGTTATAACACAACAAGGTTTATGTTCTGCTTTACATGTTTTACTATGTTGTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGCCGGCGTTGTTCGAGAATTAATAGAGATCCAATTAACCGCGGTACACGAAAAGAGAATCACAGAACTAACATTTGGAATTTTGTTTCATTTGTGTTCTTGTGCTAATGGTAGATTTCAATTTTTAAGTCATGAAGGTTCAATTGCAGTGTTAACTGAGAGAATCTTGAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTTTCATTGATATCAAAATTTTCAGCTACAAAGAATGTTTTGGATGAGATGTTAAAAGTTGGAACAGTTTCAAAGCTTTTTGTTTTGTTACAAGCTGATCATGCTAAGTATTTGAAAGATAAAGTTATGCAAATATTTAAGGCTCATTCTGAGTTAATTAAGAACTTTGAAGAAGTTTGA 1143 0.322 MKDPVTAITGITYDRDSIEHWLFRNKNITCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKTHVQKLVKEMKDSKFQLKSLMQLELLAAENERNRKCLLENGVPRSMIMFLVDCYKKGEILEGIEEALSFLQFVKVPTEEVKNLLSENDQIVDSLIWILSSDMKNSVAVKSHAVMVLKKFINKCDSILLERLKPDFFDKIVKILKYGVITQQGLCSALHVLLCCCPLGRNRLMMVEAGVVRELIEIQLTAVHEKRITELTFGILFHLCSCANGRFQFLSHEGSIAVLTERILKVSMTVDDRAVFILSLISKFSATKNVLDEMLKVGTVSKLFVLLQADHAKYLKDKVMQIFKAHSELIKNFEEV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02295 380 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Trre1g02295 380 Coils Coil 97 117 - -
Trre1g02295 380 Gene3D - 77 377 IPR011989 -
Trre1g02295 380 SUPERFAMILY RING/U-box 1 65 - -
Trre1g02295 380 PANTHER WDSAM1 PROTEIN 1 376 IPR045185 GO:0061630
Trre1g02295 380 SUPERFAMILY ARM repeat 82 364 IPR016024 -
Trre1g02295 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Trre1g02295 380 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Trre1g02295 380 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02295 Trre-Chr1 18421610 18422874 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02295 1 377 U-box Gene Family AT3G11840 39.379 3.31e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02295 - - gmx:100798446 508.834