Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02293 ATGGCAACATATTTTCATAATAATACAGAAATTCAAGGTGGTTCTGCTGATGGTCTACAAACTCTCATATTCATGAACCCATCAGGCTACATCAATTACTCCGACACACCGCAACCTCCGCCACATGCCGGAAACCTCGTATTTCTAAATTCAGCCGCCGCACTCGCGGGCAACGGCAACACTTCCCTCCAACAACAACAACAGAGTCTATCTCACGCGCCACCACAATTTGTCGGGGTCCCACTCTCGGCAGAACAAACAGTACAGGCCCATCATGACATCTCCGCCTTGCATGGCTTCCCACCGCGCATGCAGTACAATATGTGGAACGCTGCTGACCAAAATTCGGCGGCGCGTGAGGCCACACGTGCTACTCAGGGGCTGTCTTTAAGCTTACATGCTCAAGGTTCGGGTGAGGATGCTCGGGTTACGGCTGGTGGGTCGTGTTCCTCTGCTTCCAACAACGGTGTTTCGGGGATTCAGAGTGTTTTGTTGAGTTCTAAGTATTTGAAGGCTACACAAGAATTACTTGATGAGGTTGTTAATGTTAATGGTGGAATTAAGGTTGAAAGTGTTAAGAAAGGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCTGTTAGTGGTGATGGTGGTTCTGTTGGTGGTGATGGAAGTGGAAAACGTAGCTCTGAATTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAGGCAAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGGTACAGACAATATCACAACCAGATGCAGATGGTGATATCTTCATTTGAACAAGTTGTAGGAATTGGGTCAGCAAGAACATACACTGCACTTGCATTACAAACAATTTCCAAGCAATTTAGGTGTTTAAAAGATGCTATTACTGGCCAAATTAGAGCTGCAAATAAAAGCTTAGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGACTTAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTAGGAATGATGCATCATAATGCTTGGAGACCACAACGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACACTTCCTTCACCCTTATCCCAAGGATTCAGATAAACACATGCTAGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGACTTTGGAAGCCAATGGTGGAAGAAATGTACGTGGAAGAGATGAAGGAGCAAGAGATGAATGGTTCTGAGGAAAACAAATCAAGCAAGAATACCGATGAAGATCCTTCAATGAAATCAACAACTCCACAACAAGTTCCAACCTCAGAAACAGAATCGAAAAGTTTCAATTCGAAACAAGACATTCCTATAGTTTCGGTTTCAACACAATCAAATTCACCAATTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACAGAACTTGATGGAATAACACAAGCAAGTCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCTCCAAATCATGTGAAATCGAATGACACAAATAATAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAATCAAACTAATTTCATTGCCGGTTTCGGTCAATACCCGATGGAGGAAATCGGTAGATTTGATGCAGAACAATTCACACCAAGGTTTTCAGGTAACAACAATGGTGTATCACTCACTCTTGGTTTACCTCATTGTGAAACATTATCAGGAACACATCAAAGTTTTATACCAAACCAAAACATTCAACTAGGAAGAAGATTGGATATTAGTGAACAAAATGAGTTTGGTGATTCTTCAGCTGCATTTGAAAGTATCAACATGCAGAATCCAAAGAGATTTGCTGCACAATTATTGCCAGATTTTGTGGCCTAA 1953 0.4066 MATYFHNNTEIQGGSADGLQTLIFMNPSGYINYSDTPQPPPHAGNLVFLNSAAALAGNGNTSLQQQQQSLSHAPPQFVGVPLSAEQTVQAHHDISALHGFPPRMQYNMWNAADQNSAAREATRATQGLSLSLHAQGSGEDARVTAGGSCSSASNNGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVESVKKGFEKNKVVGESSTAVSGDGGSVGGDGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVVGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKEQEMNGSEENKSSKNTDEDPSMKSTTPQQVPTSETESKSFNSKQDIPIVSVSTQSNSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNDTNNNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFTPRFSGNNNGVSLTLGLPHCETLSGTHQSFIPNQNIQLGRRLDISEQNEFGDSSAAFESINMQNPKRFAAQLLPDFVA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02293 650 Coils Coil 233 260 - -
Trre1g02293 650 MobiDBLite consensus disorder prediction 420 464 - -
Trre1g02293 650 Gene3D - 352 431 - -
Trre1g02293 650 FunFam BEL1-like homeodomain protein 9 352 414 - -
Trre1g02293 650 MobiDBLite consensus disorder prediction 499 525 - -
Trre1g02293 650 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Trre1g02293 650 MobiDBLite consensus disorder prediction 420 438 - -
Trre1g02293 650 MobiDBLite consensus disorder prediction 205 234 - -
Trre1g02293 650 MobiDBLite consensus disorder prediction 439 464 - -
Trre1g02293 650 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Trre1g02293 650 SMART HOX_1 349 413 IPR001356 GO:0003677
Trre1g02293 650 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 434 - -
Trre1g02293 650 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Trre1g02293 650 CDD homeodomain 349 410 IPR001356 GO:0003677
Trre1g02293 650 Pfam Associated with HOX 163 300 IPR006563 -
Trre1g02293 650 SMART prehox3 158 301 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02293 Trre-Chr1 18402636 18405885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02293 1 650 Homeobox Transcription Factor Family AT2G35940 51.796 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre1g02293 POX 7.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02293 - - gmx:100810851 927.161