Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02289 ATGGATCAAGAGAAGGAAGTTTCAGAATATTTTCTATGTCCCATTTCATTACAACTCATGAAAGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGACAAAGCATTGAAAAATGGCTCTTTTCATCACAAAACAAAACATGTCCTGTCACTAAACAACAACTCACACATGATAATAATGATCTTATTATTCTCACACCAAATCACACTCTTCGTAGACTCATTCAAGCATGGTGCACCATTAACACTTCTCAAACAATTCCAACTCCAAAACCACCAACAACTAAGACACTTATAGAGAAACATCTCAAAGATGCTTCTGATTCTCCTCATTTGCTTATTCAATCCCTCAAAAGCCTCAAAACAATCGCATCCGAGAGCGAAACAAATCGAAGATGTATCGAATCTGCCGGCGCAGTTGAGTTCTTGGCTTCAACAGTAACAAAAAATAACACAAGTTCTTCATCTTTATGTTCAAGTTCAACCACAGAATTTGAAATTGAATCTACCATTCTTGATGATGATGAAGGTTTTGCTTTTGACTTCAAAGTAGATGCAGAAGATGAAGCTATAAACATTCTTTACAATCTTCATTTATCAGAACAAAGTTTGATAACTCTCTTAAACTTCAAAAATGGAGAGTTTTTAGATTCTTTATTGAGATTACTCCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTATGACAAAAGTTGCTGATCCAACAAAACTAGCAAATCTAAAGACCGAGTTTTTCGTCGAATTAGTTCAGCTTCTGAAAGACCAGATATCAAAAAAGGCATCCAAAGCAACACTACAAACTTTAATTCAAGTTGTCGAATTCGGGAGAAATAGAGTAAAAGCAATTCAATCAGGGTGTGTTAATGTTCTGATAGAACTTCTTCTTGATAGCAAAGAAAGGAAACCATGTGAGATGATATTGGTAGTTTTGGAGAAGTTGTGTCAATGTGCTGATGGAAGATATGAACTATTAAGCCATGGTTGTGGTTTAGCTATTGTTTCAAAGAAGATTCTAAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTGTTGTAGCTAAGCTGTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAAGCTAAGGACAAAGCAAGAGAGATTCTTAAATTGCATGCAAAGTCTTGGAGAAGTTCTCAATGCATACCTTCTAACTTACTTGCTTCATACCCAACAAGTGGGTGA 1311 0.3547 MDQEKEVSEYFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNKTCPVTKQQLTHDNNDLIILTPNHTLRRLIQAWCTINTSQTIPTPKPPTTKTLIEKHLKDASDSPHLLIQSLKSLKTIASESETNRRCIESAGAVEFLASTVTKNNTSSSSLCSSSTTEFEIESTILDDDEGFAFDFKVDAEDEAINILYNLHLSEQSLITLLNFKNGEFLDSLLRLLQKGNYDSRTYSVFLLKSMTKVADPTKLANLKTEFFVELVQLLKDQISKKASKATLQTLIQVVEFGRNRVKAIQSGCVNVLIELLLDSKERKPCEMILVVLEKLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLQVDSGNKAKDKAREILKLHAKSWRSSQCIPSNLLASYPTSG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02289 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Trre1g02289 436 SUPERFAMILY ARM repeat 100 417 IPR016024 -
Trre1g02289 436 FunFam RING-type E3 ubiquitin transferase 7 85 - -
Trre1g02289 436 SUPERFAMILY RING/U-box 5 83 - -
Trre1g02289 436 PANTHER WDSAM1 PROTEIN 6 425 IPR045185 GO:0061630
Trre1g02289 436 Gene3D - 89 422 IPR011989 -
Trre1g02289 436 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Trre1g02289 436 CDD RING-Ubox_PUB 9 59 IPR045210 -
Trre1g02289 436 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Trre1g02289 436 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02289 Trre-Chr1 18312813 18314123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02289 1 433 U-box Gene Family AT3G52450 51.693 1.26e-150 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02289 - - tpra:123902305 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02289 1 18312813 18314123 Trre1g02289 1 18312813 18314123 ECH
Trre13g04562 13 53088277 53089542 Trre1g02289 1 18312813 18314123 PCT