Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02274 ATGGCGAATTTACCCCCTCAATCATCCTCTGCGAAGAAAGATGAATCGAATTCCAGTGTTTGTGCATCCAGCACTGATTCGACCAAGATGATGTACGCAAAATGTCTTGTTACTGAACTGCACAATCCAGATCTACGAGAAAATGCGCTTACTGTGCTCTCCAAGATGAAAGATTTATTTCAAGAACTTGCTCCATTATTATGGAATTCTTTTGGTATTATTGCAGTATTTTTACAGGAAATAATTACAATATATCCTGTACTTTCAACAACAGATCTTACTCCTGCACAATCAACTCGAATATGCAATGTTCTTGCTCTACTTCAGTGTGTGGCATCCCACCCCACTACAAAGATGGCATTTCTAAAAGCCAAACTGCCTGTGTATTTGTATCCCTACCTTCGCACATCAAACAAGTTGGCACCATATGAGGATTTGAGACTTGGTACTCTTGGAGTCATTGCTGCCACAGTCAAGGTTAAGACCAGAGAAGCAATAGATTTCCTTTTGGAAAGTGAAGTCATGCCACTGTGCTTACACAGTATAGAAGTTGGCAAAGAACTGTCCAAAACTGTTGCAGCTTTTATTGTTGAGAAAATTCTGTCAGATCATGCTGGTATGGCTTATGTCTGTGTCATACCAGAACGCTATTTTGCAGTAACCCGAGCTTTGGACATATTGGCAGGTTCTCAGAATCAACCTTCATCGCGGCTTGTGAAGTTGTTGATTTCGTGTTATACCTATCTCTCAGAAAAAGAAGGATTGTTTATTCAGAAAACAATTCCACCACCACCGCCACCACCACAATCTTAG 813 0.4059 MANLPPQSSSAKKDESNSSVCASSTDSTKMMYAKCLVTELHNPDLRENALTVLSKMKDLFQELAPLLWNSFGIIAVFLQEIITIYPVLSTTDLTPAQSTRICNVLALLQCVASHPTTKMAFLKAKLPVYLYPYLRTSNKLAPYEDLRLGTLGVIAATVKVKTREAIDFLLESEVMPLCLHSIEVGKELSKTVAAFIVEKILSDHAGMAYVCVIPERYFAVTRALDILAGSQNQPSSRLVKLLISCYTYLSEKEGLFIQKTIPPPPPPPQS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02274 270 Pfam Cell differentiation family, Rcd1-like 36 253 - -
Trre1g02274 270 PANTHER UNCHARACTERIZED 26 253 IPR007216 GO:0006402|GO:0030014
Trre1g02274 270 Gene3D - 25 260 IPR011989 -
Trre1g02274 270 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g02274 270 SUPERFAMILY ARM repeat 41 202 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02274 Trre-Chr1 18201633 18206219 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre1g02274 Rcd1 1.5e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02274 K12606 - sind:105174887 278.485