Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02271 ATGAACAATTTATTCACCGGTTCATTTTCTCGCTTCCGTAGCGAAGAAGTCTCACCGGACCGCCACCATGTGATTGAGATGACAGACAGTCCAGGAGCCACCGTTGGTAGAGTAAACCTCGACAAATTCTTCGACGATGTAGAAGGTGTAAAAGACGATCTAAAAGAGCTTGAAGTAATTTCACATAGACTCGAGAAGAGTCATGAACAGAGCAAAACGGTTCACGATGCTAAGGGAGTTAAGGATTTGCGTTCTCGTATGGACGACGACGTTTCGGTAGCTTTGAAAAAAGCGAAGATGGTGAAACTGAAATTGGAGGCGTTAGAACGATCTAATGCTGCGAACCGGAATTTGCCAGGGTGTGGACCGGGTTCGTCTTCGGACCGGACGAGAAGTTCTGTGGTCAACGGTTTGAAAAAAAAGCTTAAGGATTCTATGGAAACTTTTAACCGTCTCCGTGAACTTATCTCTTCGGAGTATAGAGAGACTGTTCAACGCCGTTATTTTACCGTTACTGGCGAGAATCCTGATGATAAGACTCTTGATCTGTTGATCTCCACTGGTGAGAGTGAGACCTTTCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTATTGACACAATCAATGAGATTCAAGAGAGGCACGATGCTGTCAAAGAGTTGGAGAAGAGTCTACTGGCGTTGCACCAAGTGTTCCTCGACATGACAGTATTGGTACAATTTCAAGGTGAGCAATTGGACGACATTGAGAGCCATGTGGCGAGGGCGAGCTCGTTTGTGCACACTGGAGCTGAGCAGTTACAGACTGCAAGGAAGCACCAGAAAAACACAAGAAAATGGACCTGTTATTGTATTATACTTCTTCTGATCATCATCTTGGTTGTGGTTCTCTCTGTTTTGAAACCGTGGCAACATAATGATAGTGGTGGCGGTGGGGGTAATCAGCCTGCTCCAGCGCAGACAACCCCGTCTCCTCCTCCCCCTCCTGCTACTCAACCTTAG 1008 0.4623 MNNLFTGSFSRFRSEEVSPDRHHVIEMTDSPGATVGRVNLDKFFDDVEGVKDDLKELEVISHRLEKSHEQSKTVHDAKGVKDLRSRMDDDVSVALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRSSVVNGLKKKLKDSMETFNRLRELISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRIIDTINEIQERHDAVKELEKSLLALHQVFLDMTVLVQFQGEQLDDIESHVARASSFVHTGAEQLQTARKHQKNTRKWTCYCIILLLIIILVVVLSVLKPWQHNDSGGGGGNQPAPAQTTPSPPPPPATQP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02271 335 Gene3D - 38 170 - -
Trre1g02271 335 MobiDBLite consensus disorder prediction 114 133 - -
Trre1g02271 335 SMART SynN_4 35 161 IPR006011 GO:0016020
Trre1g02271 335 FunFam Syntaxin 132 203 303 - -
Trre1g02271 335 CDD SynN 40 197 IPR006011 GO:0016020
Trre1g02271 335 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Trre1g02271 335 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre1g02271 335 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
Trre1g02271 335 PANTHER SYNTAXIN 64 293 IPR045242 -
Trre1g02271 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Trre1g02271 335 MobiDBLite consensus disorder prediction 321 335 - -
Trre1g02271 335 CDD SNARE_syntaxin1-like 209 271 - -
Trre1g02271 335 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 37 167 - -
Trre1g02271 335 MobiDBLite consensus disorder prediction 118 133 - -
Trre1g02271 335 MobiDBLite consensus disorder prediction 309 335 - -
Trre1g02271 335 Pfam SNARE domain 246 298 IPR000727 -
Trre1g02271 335 Gene3D - 205 303 - -
Trre1g02271 335 SMART tSNARE_6 205 272 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02271 Trre-Chr1 18164322 18166683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02271 30 331 SNARE and Associated Proteins AT3G11820 71.895 5.56e-147 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02271 K08486 - gmx:100809258 483.796