Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02270 ATGAATGATTTATTCTCAGGCTCTTTCTCCCGCTTCCGCAGTTCGGATCAAGTCTCACCAGACAACCACCACCATGTGATTGAAATGTCATCACCGACCAGCGCACAAAGCGGTGTTCAGCTAGACAAGTTCTTCGAAGAAGTTGAAGGAGTTAAAGAGGAATTGAAGGAGCTAGATCGTCTCTATGAAAACCTTCGAGCCTCCCACGAGAGGAGCAAGACTCTTCATAGCGCGAAATCTGTGAAGGATATTCGCTCCAAAATGGACGCTGATGTGGCTTTAGCTCTTAAAAAAGCTAAACTTGTTAAACTCCGGCTTGAGGCACTTGACCGGTCCAACGAGGCTAGTAGGAGTTTGCCTGGTGCTGGACCAGGTTCGTCCTCGGACCGGACTAGAACCTCGGTGGTGAGTGGTTTGAGGAAGAAACTTAAAGACTCCATGGATAGCTTCAACGAACTAAGACAACAAATATCCTCTGAATATAGAGAAACCGTACAACGTAGATACTATACTGTTACCGGAGAGAATCCAGATGACAAAACCGTTGACCTCCTCATTTCGACCGGTGAAAGTGAAACATTTTTACAAAAAGCAATCCAGCAACAAGGAAGAGCAAACATCATGGACACAATCCAAGAAATTCAAGAAAGACATGACACAGTGAAAGAGATTGAGAGAAATTTAATGGAACTCCACCAAGTGTTTATGGACATGTCTGTTTTGGTTCAATCACAAGGTGAACAATTAGATAATATTGAAAGCCACGTGGCACGTGCTAATTCGTACGTTAGAGGTGGGGTCCAACAATTGCATGTTGCTAGGAAGCACCAAAAGAATACCAGAAAGTGGACTTGTATTGCCATCATAATTCTTCTCATTATCATCTTGATCATAGTTTTGCCTATTGTCCTTAAAAATTAA 921 0.4289 MNDLFSGSFSRFRSSDQVSPDNHHHVIEMSSPTSAQSGVQLDKFFEEVEGVKEELKELDRLYENLRASHERSKTLHSAKSVKDIRSKMDADVALALKKAKLVKLRLEALDRSNEASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNELRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVLVQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIIILLIIILIIVLPIVLKN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02270 306 Coils Coil 41 71 - -
Trre1g02270 306 Gene3D - 39 171 - -
Trre1g02270 306 Pfam SNARE domain 247 299 IPR000727 -
Trre1g02270 306 MobiDBLite consensus disorder prediction 112 135 - -
Trre1g02270 306 FunFam Syntaxin 132 204 304 - -
Trre1g02270 306 PANTHER SYNTAXIN 40 293 IPR045242 -
Trre1g02270 306 SMART tSNARE_6 206 273 IPR000727 -
Trre1g02270 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Trre1g02270 306 Gene3D - 199 304 - -
Trre1g02270 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Trre1g02270 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre1g02270 306 MobiDBLite consensus disorder prediction 119 134 - -
Trre1g02270 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Trre1g02270 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Trre1g02270 306 CDD SynN 41 198 IPR006011 GO:0016020
Trre1g02270 306 CDD SNARE_syntaxin1-like 210 270 - -
Trre1g02270 306 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02270 Trre-Chr1 18155902 18157061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02270 29 285 SNARE and Associated Proteins AT3G11820 73.541 2.52e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02270 K08486 - gmx:100793347 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02270 1 18155902 18157061 Trre1g02270 1 18155902 18157061 ECH
Trre13g04565 13 53131632 53133033 Trre1g02270 1 18155902 18157061 PCT