Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02268 ATGGCTGCTGGTGCTACCATTGTTGCTTCGTTCTCCATCTATCCAAAATTCGTTAACTTTTCCTCTGCTACTCATTCTTCCATTTCACTCACCACCCTTAACTTCCCACACACAAAAACCATTTCTCCAAAACCCCAATTATTCAACTCTCTTCATTGTCTTCCTTCAATTTCCTTCCATGAATTCCTACTCACTCAAAAAATAATAGAAGTAGATGAAGATGAAGACGAAGAAGAAGACGAAGAAGTAGACGAAGAAGATGAAGAGGAAGAGCAACCTAGGAGACTCTTTGTTGGAAACTTGCCATTTTCATTATCTTCTTCTCAATTAGCTGAACACTTTCGAGAAGCTGGAAATGTTGTGTCTGTCGAGATTGTGTATGATGACATCGCGGGTAGAAGTAGAGGATTTGCATTTGTTACAATGGAGAGTGCGGAGGATGCTGAAGAAGCAATTCGAATGTTTGATGGCAATGAAGTTGGAGGTAGGGCTATTAAGGTAAACTTCCCAGAAGTGCCCAAAGCAAGCAAAAGGCTACAAATGGGCTCAAACTATAGAGGTTATGTAGACAGCCATCACAAAATCTATGCTGGAAACCTCGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTCGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATTTATGAAAGGAACAGCGGAAAGTCTCGCGGATTTGGATTTGTCTCTTTCGAAACTTCTGAAGATGTAGAGGCTGCTTTGAGTAATATGAACGGTGTGGAGGTTCAAGGCCGGCCTTTACGACTGAATTTGGTTGTAGATAGTAAGAAGCCTTCATCTTCTCCTTCTCCGGCAATTGATCAAAATAAAGGAAATAATGTTAATAGCTTGGGAATGTTGTTTGGAATAAGTAAATGA 909 0.4136 MAAGATIVASFSIYPKFVNFSSATHSSISLTTLNFPHTKTISPKPQLFNSLHCLPSISFHEFLLTQKIIEVDEDEDEEEDEEVDEEDEEEEQPRRLFVGNLPFSLSSSQLAEHFREAGNVVSVEIVYDDIAGRSRGFAFVTMESAEDAEEAIRMFDGNEVGGRAIKVNFPEVPKASKRLQMGSNYRGYVDSHHKIYAGNLGWDMTSQDLREAFAEQPGLLSAKVIYERNSGKSRGFGFVSFETSEDVEAALSNMNGVEVQGRPLRLNLVVDSKKPSSSPSPAIDQNKGNNVNSLGMLFGISK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02268 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Trre1g02268 302 SMART rrm1_1 194 267 IPR000504 GO:0003723
Trre1g02268 302 SMART rrm1_1 95 168 IPR000504 GO:0003723
Trre1g02268 302 PANTHER OS02G0815200 PROTEIN 67 271 - -
Trre1g02268 302 MobiDBLite consensus disorder prediction 71 91 - -
Trre1g02268 302 SUPERFAMILY RNA-binding domain, RBD 189 290 IPR035979 GO:0003676
Trre1g02268 302 CDD RRM2_NsCP33_like 194 268 - -
Trre1g02268 302 SUPERFAMILY RNA-binding domain, RBD 88 175 IPR035979 GO:0003676
Trre1g02268 302 FunFam 33 kDa ribonucleoprotein, chloroplastic 175 280 - -
Trre1g02268 302 MobiDBLite consensus disorder prediction 71 93 - -
Trre1g02268 302 Gene3D - 63 189 IPR012677 -
Trre1g02268 302 Gene3D - 190 293 IPR012677 -
Trre1g02268 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Trre1g02268 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Trre1g02268 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Trre1g02268 302 Coils Coil 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02268 Trre-Chr1 18151259 18153784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02268 96 268 Eukaryotic Initiation Factors Gene Family AT1G49760 34.043 1.75e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02268 - - gmx:100789843 299.286