Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02263 ATGGCTATGGAACCTGTTTACCTTAAAGAACATGAAGGAATTGTTCATAATTCAGTTGGACAGTATTCATCTGTGAATTCATCATCACCATGGTGGAGTAATAATGCCTTTGGATCTCAATCTGTTTATGGAGGAGAATCTTGTGGTCAAATGAAACCATTTTCATTGGAACTTTCCAACTACATAGATCAACTTGCTCCTCCTACTAAGCACTTGTCGAGAGGTGTTGAACAATTGTTTGATAAAGGACATCATACAACTAACCAATTTACCATTTTTCCAGATGACTGTAAGATGTCTCTTGATGCACAAAATCATCAGGCAACCTTATCACTGCAATCATCATTTTCTGCTGAGCCGCATAATCGTTTCGAGCTAGGGTTTAACCAACCTATGATCTGTGCAAAATATCCATATATGGATCAGTTTTACGGGCTGTTCTCGACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCGCTTAGCATGACATCTGATGATGGACCGACTTACGTGAATGCTAAACAGTACCATGGAATCATCAGACGCAGGCAATCCCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGCCATATATGCATGAATCGCGTCATCTACATGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAATTTCTACTGATGGAAATGGAAAAATCGGGAGTGAGATGAACAAAAAAACCGGGGGCGGCCTACAACTGCAGTCCAGTGCTTCACAGAGTTCTGAAGTGCTGCAATCTGAGGTTGGAACTTTGAATTCATTGAAGGAGACAAATGGAGGCAGTCCAAATGTCTCGGGATCAGAGGTGACCAGCATGTATTCACAGGGAGGTCTCGATAGCTTTGCTGTCAATCATATCGGATCTTCTGTTCACTCATTGGGAGACATGATCGATACTGAACACGGTATCGTCATGCCAACAAAATGGTTTGCAACAGCTGTCACTGGCAGACAGCTGTTGCAACCTTAA 1023 0.4262 MAMEPVYLKEHEGIVHNSVGQYSSVNSSSPWWSNNAFGSQSVYGGESCGQMKPFSLELSNYIDQLAPPTKHLSRGVEQLFDKGHHTTNQFTIFPDDCKMSLDAQNHQATLSLQSSFSAEPHNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKISTDGNGKIGSEMNKKTGGGLQLQSSASQSSEVLQSEVGTLNSLKETNGGSPNVSGSEVTSMYSQGGLDSFAVNHIGSSVHSLGDMIDTEHGIVMPTKWFATAVTGRQLLQP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02263 340 ProSiteProfiles NF-YA/HAP2 family profile. 167 227 IPR001289 GO:0003700|GO:0006355
Trre1g02263 340 MobiDBLite consensus disorder prediction 231 286 - -
Trre1g02263 340 PRINTS CCAAT-binding transcription factor subunit B signature 170 192 IPR001289 GO:0003700|GO:0006355
Trre1g02263 340 PRINTS CCAAT-binding transcription factor subunit B signature 201 224 IPR001289 GO:0003700|GO:0006355
Trre1g02263 340 Gene3D - 167 228 - -
Trre1g02263 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 85 292 IPR001289 GO:0003700|GO:0006355
Trre1g02263 340 SMART cbf3 166 227 IPR001289 GO:0003700|GO:0006355
Trre1g02263 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 224 IPR001289 GO:0003700|GO:0006355
Trre1g02263 340 MobiDBLite consensus disorder prediction 245 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02263 Trre-Chr1 18114263 18116662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02263 31 333 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.492 5.12e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre1g02263 CBFB_NFYA 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02263 K08064 - gmx:100808195 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04568 13 53142610 53145387 Trre1g02263 1 18114263 18116662 PCT