Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02258 ATGAATAACACAGCTGATTCATCTGGATTCTTTGGTTCCAATGACATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGGATTCTTTTACTCATCACAACAATAACACTCACATCTTATTTTTGTACAAGATCACAAGTTCCAAATCCTCCTAGAAGAAGAAACAATAATAACACCCCACATGAATTTCTTGAGCCACAACATTCAATAATTGATTTGGGATTAGATGAAGAAACAATTATGAGTTATCCAAAGATGTTATATTCTGAAGTGAAGCTTAAGAAAAATGATTCAACATCAACATGTTGTTCTATATGTTTAGGTGATTACAAAGGAAGTGATATGCTTAAGGTGTTACCTAATTGTGAACATTTGTTTCACCTTAAGTGTATAGATCCTTGGTTAAGGATGCATCCTACTTGTCCTCTTTGTAGAACTTCTCTAATTACAACACCTTTGGCTGAAATTGTTCCATTAGCAACAAGAAGAGATTCATCATATATAGTTTCTCGTTTTCTTAGGCTTGTGTTCATGGAATTAAATAGTTCTGGAAATGGAAGAGCTTGA 570 0.3333 MNNTADSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNPPRRRNNNNTPHEFLEPQHSIIDLGLDEETIMSYPKMLYSEVKLKKNDSTSTCCSICLGDYKGSDMLKVLPNCEHLFHLKCIDPWLRMHPTCPLCRTSLITTPLAEIVPLATRRDSSYIVSRFLRLVFMELNSSGNGRA 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02258 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 151 IPR013083 -
Trre1g02258 189 Pfam Ring finger domain 104 146 IPR001841 -
Trre1g02258 189 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 155 IPR045899 -
Trre1g02258 189 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Trre1g02258 189 CDD RING-H2_PA-TM-RING 103 146 - -
Trre1g02258 189 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Trre1g02258 189 SMART ring_2 104 145 IPR001841 -
Trre1g02258 189 SUPERFAMILY RING/U-box 80 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02258 Trre-Chr1 18064823 18069699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02258 6 162 C3H Transcription Factor Family AT2G35910 57.407 7.95e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02258 - - gmx:121172638 234.958