Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02245 ATGGGAAACAACTGTGTCGGATCGAGAACCTCACGTTCGAAGGACGAATCATCGCCCTCTAAACTTCCAACTCCATCTTGCTGGTCACGTGGAACCAAGAAAGATCATTTACACAAAACAAATCCAACAAAAGCTACAGAAACTGTTCAAAATCGGCCTCCACAGGTAGTGAAAATTGAAACGGAGGATGTAAAACCACAACAGCAACAACAACCAAAACCACAAACTAATCAAGCTGTTGTTGCTACACCTGCCAAACCAAAGAAACCTCACAATGTGAAGAGAATGGCAAGTGCAGGGCTAAAAACAAATTCAGTTTTACAGCGAAAAACGGTTAGTCTTAGAGAGTTTTATAATTTGGGACCAAAGCTTGGACAAGGGCAATTTGGAACTACGTTTCTTTGTGTCGAAAAAGCTACTGGAAAAGAGTATGCATGTAAATCCATCATGAAGAGGAAATTGTTGACAGAAGAGGATGTTGAAGATGTGAGGAGGGAGATTCAGATTATGCATCACTTGGCCGGAAGTCCGAACGTGATTTCAATTAAGGAAGCTTCTGAGGATGCCGTTGCTGTTCATGTTGTTATGGAGTTGTGTTCGGGTGGTGAACTTTTCGATAGGATTGTTGAAAGAGGGCATTATACAGAAAGAAAAGCAGCTAAACTTGCGAGGACTATTGTTGGTGTAATTCAGTCATGTCATTCTCTTGGTGTAATGCATCGCGATCTTAAGCCGGAGAATTTTCTTTTCGTTAATCAACAGGAAGATTCTCCTCTTAAGGCTATAGATTTTGGACTATCTGCTTTTTTTAAACCAGGTGACATTTTCAATGATGTAGTAGGAAGTCCTTACTATGTTGCACCTGAAGTTTTACGCAAGCGGTATGGCCCGGAAGCGGATGTGTGGAGTGCCGGTGTCATCTTGTACATTCTCTTATGTGGCGTTCCTCCATTTTGGGGCGAATCGGAGCAAGAGATATTTGAGGCCATTTTGAATAGTGATCTTGATTTCTCTTCAGATCCATGGCCTAGTATCTCGGAAAGTGCAAAAGACTTGGTTATGAAGATGCTTGTCAGAGATCCTAGTAAACGGTTATCAGCTTATGACGTTCTTCGCCATCCATGGATCCAGGTGGACGGAGCAGCTCCTGACAAGCCTCTTGATTCGGCAGTTTTAAGCCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGATGAAATTGCTGGATTGAGAGAAATGTTTAAGATGATCGACACTGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTCGGACTGAAAAAATTTGGTGCCAATCTCAATGAATCTGAAATTTACGATCTAATGCAAGCTGCGGATGTTGATAACAGTGGTACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATCTAAACAAAATTGATAGGGAAGATCATTTAGTTGCAGCTTTCTCATATTTCGATAAAGATGGAAGTGGATATATCACTAAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCCTATCGAATGTCCCCTTGGAAGAAATGATCCGAGAAGCTGATCAAAATAATGATGGACGAATAGACTACAACGAATTTGTGGCTATGATGCAGAGAGGAAATGCAGAAAGGAGAGGTCGAAAGGGTAGCAGTACTAGTTTTAGAATTGGATTTAGGGAAGCACTACCAGTATGTTAA 1749 0.4094 MGNNCVGSRTSRSKDESSPSKLPTPSCWSRGTKKDHLHKTNPTKATETVQNRPPQVVKIETEDVKPQQQQQPKPQTNQAVVATPAKPKKPHNVKRMASAGLKTNSVLQRKTVSLREFYNLGPKLGQGQFGTTFLCVEKATGKEYACKSIMKRKLLTEEDVEDVRREIQIMHHLAGSPNVISIKEASEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHSLGVMHRDLKPENFLFVNQQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQEIFEAILNSDLDFSSDPWPSISESAKDLVMKMLVRDPSKRLSAYDVLRHPWIQVDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEDEIAGLREMFKMIDTDNSGQITFEELKVGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIDREDHLVAAFSYFDKDGSGYITKDELQKACEEFGLSNVPLEEMIREADQNNDGRIDYNEFVAMMQRGNAERRGRKGSSTSFRIGFREALPVC 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02245 582 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Trre1g02245 582 MobiDBLite consensus disorder prediction 1 93 - -
Trre1g02245 582 SMART efh_1 459 487 IPR002048 GO:0005509
Trre1g02245 582 SMART efh_1 423 451 IPR002048 GO:0005509
Trre1g02245 582 SMART efh_1 495 523 IPR002048 GO:0005509
Trre1g02245 582 SMART efh_1 529 557 IPR002048 GO:0005509
Trre1g02245 582 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Trre1g02245 582 ProSitePatterns EF-hand calcium-binding domain. 538 550 IPR018247 -
Trre1g02245 582 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Trre1g02245 582 Gene3D Phosphorylase Kinase; domain 1 121 203 - -
Trre1g02245 582 PANTHER SERINE/THREONINE-PROTEIN KINASE 105 550 - -
Trre1g02245 582 CDD EFh 495 555 IPR002048 GO:0005509
Trre1g02245 582 SUPERFAMILY Protein kinase-like (PK-like) 117 377 IPR011009 -
Trre1g02245 582 Pfam Protein kinase domain 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02245 582 Pfam EF-hand domain pair 495 555 IPR002048 GO:0005509
Trre1g02245 582 MobiDBLite consensus disorder prediction 62 82 - -
Trre1g02245 582 FunFam Calcium-dependent protein kinase 1 120 203 - -
Trre1g02245 582 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Trre1g02245 582 FunFam Calcium-dependent protein kinase SK5 204 388 - -
Trre1g02245 582 SUPERFAMILY EF-hand 415 556 IPR011992 -
Trre1g02245 582 Gene3D - 401 560 - -
Trre1g02245 582 CDD STKc_CAMK 117 375 - -
Trre1g02245 582 SMART serkin_6 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02245 582 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Trre1g02245 582 ProSiteProfiles Protein kinase domain profile. 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02245 582 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g02245 582 Pfam EF-hand domain pair 436 486 IPR002048 GO:0005509
Trre1g02245 582 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Trre1g02245 582 CDD EFh 424 483 IPR002048 GO:0005509
Trre1g02245 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Trre1g02245 582 FunFam Calcium-dependent protein kinase 1 384 558 - -
Trre1g02245 582 Gene3D Transferase(Phosphotransferase) domain 1 204 400 - -
Trre1g02245 582 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Trre1g02245 582 ProSiteProfiles EF-hand calcium-binding domain profile. 530 560 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02245 Trre-Chr1 17929613 17932596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02245 47 558 EF-hand Containing Proteins AT3G10660 75.096 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g02245 Pkinase 5.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02245 K13412 - gmx:100783079 976.852