Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02237 ATGGAGAGAGGAAATACAATGGGGATATCTAGGACAAAATCGGATCAGCTGGTGGAGTCGATGGCTGCGGCTCTAAAGTCGCCACAATCGAGCGATCACTCGGCCAATGGAGCTGTGGAAGGGAGTGGAGGATTGTCGAGGAAGTCAAGCATGAGGATAACTGCGGCGTCGCCGGGACGAAGCGGAGGGAGGAACACACACATAAGGAAAACAAGAAGTGCTCAATTGAAGATTGATTTTGATGAGTTGGGTAGTGGCGCGGCTCTTAGCCGAGCTTCAAGTGCCAGCTTGGGTCTCTCATTTTCATTCACTGGATTCACTATGCCTCCTGATCAAATTGCTGATACAAAACCATTCAGTGATGATGATATGATTCCTGAGGATATTGAAGCAGGAATTAGGACAAAGACAAAGTTTCAAACAGAACCTACTCTGCCTATATATCTTAAGTTCACTGATGTGACCTACAAGGTAGTGCTTAAAGGCATGACATCAAGTGAGGAGAAAGATATCTTGTATGGGATCAGTGGTTCTGTAAATCCAGGTGAAGTTTTAGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAACTCTTTTAAATCTCCTTGGAGGAAGGCTAACTCAGCACACAGTTGGTGGTTCTATCACTTACAATGACCAATCATATTCTAAGTTCCTTAAAAGCAGGATAGGATTTGTGACACAAGATGATGTTTTGTTTCCTCATCTGACCGTGAAAGAGACGTTGACATACGCAGCCCGGTTAAGACTTCCAAAGACATTCACTAAGGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTACGAGCTTGGCTTAGAGAGGTGTCAAGATACTATGATCGGTGGTTCATTTGTTCGCGGAATATCTGGTGGGGAGAGGAAGAGAGTTTGTATCGGAAATGAGATCATAATCAACCCTTCTATTCTGTTTCTTGATGAACCAACGTCTGGTTTGGATTCAACAACTGCCTTGAAGATTGTTCAGATGCTGCAAGACATAGCAGAGGCGGGGAAAACAGTAGTGACAACAATTCATCAACCTTCGAGTAGACTCTTCCACAAATTCGACAAGTTGATTCTTCTTGGGAAAGGAAGTTTGCTTTACTTTGGAAAAGCATCGGAAGCAATGAACTACTTCCAATCTATAGGATGTTCGCCGCTTATTTCCATGAATCCAGCAGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAATGATGTGTCTGTACCATCCGAGTTGGAGGATAAAGTGCTAATTGGAAATGCAGAAGTTCAAAAATATAACGGAAAACCATCACCAGCAGTAGTCCATGAGTATCTAGTGGAGGCGTATGAATCTCGAGTTGCGGAAACAGAGAAGAAAAAAATTATGGTTTCTGTGCCTCAAGATGAAGCTTTGAAGGATAAAATATGTTCACAAAGACAATGGGGAGCAAGGTGGGATGAGCAATTTTCCATACTTTTTTGGAGAGGAATCAAAGAAAGGAGGCACGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACTGCAATCATCTTAGGATTACTTTGGTGGCAATCAGATGCTAAGAACCCAAAAGATCTGCAAGATCAGGCAGGACTACTTTTCTTTATTGCTGTGTTTTGGGGATTCTTTCCGGTTTTTACTGCAATATTTACATTTCCTCAAGAGAGAGCAATGTTGAATAAAGAACGTGCAGCAGATATGTACCGATTAAGTGCATACTTCCTTGCGAGAACTACAAGTGACCTTCCACTAGACCTGATTTTACCAGTGCTTTTTCTCCTCGTTGTTTACTTCATGGCTGGTCTGAGACTAAGTACAGCCCCTTTTTTCCTCACCATTCTTACTGTTTTCCTCTGCATCATTGCAGCTCAGGGTCTTGGACTTGCTATCGGTGCTACGCTTATGGACTTGAAAAGAGCAACAACTCTGGCTTCGGTAACTGTGATGACCTTCATGCTTGCTGGAGGATTTTTTGTTCAGAAAGTACCGATATTCATTTCTTGGATCCGCTACATGTCTTTCAACTACCATACTTACAAACTGTTGCTCAAGGTGCAATATGAACATCTCACACCTGTCATAAATGGAGTCAAAATTGACAGTGGTTTGACAGAAGTAGCTGCACTGATTGCCATGGTTTTCGGTTACCGTTTCTTGGCATATCTTTCATTGCGGCGAATGAAACTTCAATAG 2226 0.4236 MERGNTMGISRTKSDQLVESMAAALKSPQSSDHSANGAVEGSGGLSRKSSMRITAASPGRSGGRNTHIRKTRSAQLKIDFDELGSGAALSRASSASLGLSFSFTGFTMPPDQIADTKPFSDDDMIPEDIEAGIRTKTKFQTEPTLPIYLKFTDVTYKVVLKGMTSSEEKDILYGISGSVNPGEVLALMGPSGSGKTTLLNLLGGRLTQHTVGGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGISGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSVPSELEDKVLIGNAEVQKYNGKPSPAVVHEYLVEAYESRVAETEKKKIMVSVPQDEALKDKICSQRQWGARWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDAKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSTAPFFLTILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPVINGVKIDSGLTEVAALIAMVFGYRFLAYLSLRRMKLQ 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02237 741 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 149 395 IPR003439 GO:0005524
Trre1g02237 741 MobiDBLite consensus disorder prediction 20 70 - -
Trre1g02237 741 Pfam ABC-2 type transporter 352 456 IPR043926 GO:0140359
Trre1g02237 741 CDD ABCG_EPDR 146 377 - -
Trre1g02237 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 387 IPR027417 -
Trre1g02237 741 Gene3D - 148 389 IPR027417 -
Trre1g02237 741 MobiDBLite consensus disorder prediction 20 37 - -
Trre1g02237 741 SMART AAA_5 181 372 IPR003593 GO:0016887
Trre1g02237 741 MobiDBLite consensus disorder prediction 47 61 - -
Trre1g02237 741 Pfam ABC-2 type transporter 489 698 IPR013525 GO:0016020|GO:0140359
Trre1g02237 741 Pfam ABC transporter 174 323 IPR003439 GO:0005524
Trre1g02237 741 ProSitePatterns ABC transporters family signature. 295 309 IPR017871 GO:0005524|GO:0016887
Trre1g02237 741 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 123 732 - -
Trre1g02237 741 FunFam ABC transporter G family member 22 159 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02237 Trre-Chr1 17855645 17866910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02237 112 409 Calmodulin-binding Proteins AT2G36910 27.632 4.02e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02237 K05681 - gmx:100798801 1239.56