Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02235 ATGGGCAACAACTGTGTCGGACCAAACCTCGGCGGAAATGGTTTCCTTCAATCCGTTTCGGCTGCCGTATGGAAAACCCGTCCGCCGGAGCCATCGCTTCCTCCATCTAACGGCGCCGATGATAAAGACAAAGACAAAAATCAGTCTCCGACATCCTCTAAAACAGAGTCGACTTCCGCCGGAAAAGGTTCCGAAGGTTCTAATAATCCTCCCATGCCGGTTCAGAACACGCCGCCTGAACCGGTGAAAATAGCCTCTGAAGAAACAAAACCGCTTCCGCTTGACCATGAAAAGCCTGCTAAAGCTAAACCAGAGGTAGTAAATAATGCACCACCAGCATCTAGTACTACCGGTGGCGGTGGCGGTGGTGGAAGTGGTGGTGGTGGTGGTGAGGGTGAAAAAGCTAAGAAACCTACACATGTGAAAAGGGTATCAAGTGTTGGACTTCAGGTAGAATCTGTATTGGGTAGAAAAACAGAGAATATAAAAGAATTTTTTAGTTTGGGAAGAAAATTAGGTCAAGGGCAATTTGGGACAACATTTTTATGTGTGGAGAAAGGGTCTAATAAGGAATTTGCATGCAAATCAATTGCAAAGAGGAAACTAACAACACAAGAAGATGTTGAGGATGTTAGAAGAGAGATTAGGATAATGCATCATTTAGCTGGTCACCCAAATGTGATACAGATAATTGGTGCTTATGAAGATGCTGTTGCTGTTCATGTTGTTATGGAGTTATGTGCTGGTGGTGAACTTTTTGATAGGATTATACAGAGAGGACATTATACTGAGAGAAAAGCTGCTGAACTTGCTAGGTTGATTTTAGGAGTTGTTCAAGCTTGTCATTCTTTAGGTGTTATGCATAGAGATTTGAAGCCTGAGAATTTTCTTTTTGTTAGTCATGAAGAAGAATCTCGGCTTAAGACAATTGATTTTGGACTCTCTGTGTTTTTCAGACCAGGTGAAACATTTACTGACGTGGTTGGCAGTCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGAACTATGGTCAAGAATGTGATGTTTGGAGCGCTGGGGTGATCATTTATATTTTACTCAGTGGAGTTCCTCCATTTTGGGATGAAACGGAACAAGGAATATTTGAGCAAGTATTGAAAGGAGAGCTTGACTTTATTTCTGAACCATGGCCCAGCATATCTGAAAGTGCAAAGGATCTTGTTCGAAGAATGCTTGTAAGGGATCCTAAGAAACGGTTAACGGCACATGAAGTTCTTTGCCATCCTTGGGTCCAGGTTGGTGGTGTTGCCCCTGATAAACCACTTGATTCTGCTGTCTTATCTCGTTTAAAGCAATTCTCTGCAATGAACAAGCTCAAGAAAATAGCCATTCGAGTAATCGCTGAAAATCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAGGATGATAGACGCAGATAATAGCGGACAGATCACTCTTGAGGAGCTGAAAAATGGTTTAGAGAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATCACCTGGTTGATGCAAGCGGCAGACATTGATAATAGTGGTACCATAGACTATGGTGAATTTATAGCAGCTATGCTTCATCTAAACAAGATCCAGAAGGAGGATCATCTATTTGCAGCCTTTAACTACTTTGACAAAGATGGTAGTGGATACATTACAAAGGATGAGCTTCAAAAAGCCTGCGAACAGTTTGGCCTACAAGAAGATCATCTAGATGATATAATACGCGAAGCTGATAAGGATAATGATGGACGCATTGACTACAGCGAATTTGTTGCAATGATGCAAGACACTGATTTTGGCAAAAAGGGGATACAAACAGCATGA 1848 0.4221 MGNNCVGPNLGGNGFLQSVSAAVWKTRPPEPSLPPSNGADDKDKDKNQSPTSSKTESTSAGKGSEGSNNPPMPVQNTPPEPVKIASEETKPLPLDHEKPAKAKPEVVNNAPPASSTTGGGGGGGSGGGGGEGEKAKKPTHVKRVSSVGLQVESVLGRKTENIKEFFSLGRKLGQGQFGTTFLCVEKGSNKEFACKSIAKRKLTTQEDVEDVRREIRIMHHLAGHPNVIQIIGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLILGVVQACHSLGVMHRDLKPENFLFVSHEEESRLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKNYGQECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFISEPWPSISESAKDLVRRMLVRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFRMIDADNSGQITLEELKNGLERVGSVLKDSEITWLMQAADIDNSGTIDYGEFIAAMLHLNKIQKEDHLFAAFNYFDKDGSGYITKDELQKACEQFGLQEDHLDDIIREADKDNDGRIDYSEFVAMMQDTDFGKKGIQTA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02235 615 MobiDBLite consensus disorder prediction 51 71 - -
Trre1g02235 615 ProSiteProfiles EF-hand calcium-binding domain profile. 575 608 IPR002048 GO:0005509
Trre1g02235 615 FunFam Calcium-dependent protein kinase SK5 252 436 - -
Trre1g02235 615 ProSitePatterns EF-hand calcium-binding domain. 552 564 IPR018247 -
Trre1g02235 615 SUPERFAMILY EF-hand 463 603 IPR011992 -
Trre1g02235 615 FunFam Calcium-dependent protein kinase 1 168 251 - -
Trre1g02235 615 ProSitePatterns Protein kinases ATP-binding region signature. 172 199 IPR017441 GO:0005524
Trre1g02235 615 FunFam Calcium-dependent protein kinase 1 432 606 - -
Trre1g02235 615 Gene3D - 431 607 - -
Trre1g02235 615 ProSiteProfiles EF-hand calcium-binding domain profile. 503 538 IPR002048 GO:0005509
Trre1g02235 615 SMART serkin_6 166 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02235 615 PANTHER SERINE/THREONINE-PROTEIN KINASE 158 598 - -
Trre1g02235 615 ProSiteProfiles EF-hand calcium-binding domain profile. 539 574 IPR002048 GO:0005509
Trre1g02235 615 Pfam Protein kinase domain 167 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02235 615 MobiDBLite consensus disorder prediction 89 103 - -
Trre1g02235 615 Gene3D Transferase(Phosphotransferase) domain 1 252 429 - -
Trre1g02235 615 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Trre1g02235 615 CDD STKc_CAMK 165 423 - -
Trre1g02235 615 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Trre1g02235 615 SMART efh_1 471 499 IPR002048 GO:0005509
Trre1g02235 615 SMART efh_1 507 535 IPR002048 GO:0005509
Trre1g02235 615 SMART efh_1 543 571 IPR002048 GO:0005509
Trre1g02235 615 SMART efh_1 577 605 IPR002048 GO:0005509
Trre1g02235 615 MobiDBLite consensus disorder prediction 21 144 - -
Trre1g02235 615 Pfam EF-hand domain pair 472 532 IPR002048 GO:0005509
Trre1g02235 615 Pfam EF-hand domain pair 542 603 IPR002048 GO:0005509
Trre1g02235 615 Gene3D Phosphorylase Kinase; domain 1 168 251 - -
Trre1g02235 615 ProSitePatterns EF-hand calcium-binding domain. 516 528 IPR018247 -
Trre1g02235 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Trre1g02235 615 ProSitePatterns EF-hand calcium-binding domain. 586 598 IPR018247 -
Trre1g02235 615 SUPERFAMILY Protein kinase-like (PK-like) 166 425 IPR011009 -
Trre1g02235 615 ProSiteProfiles Protein kinase domain profile. 166 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02235 Trre-Chr1 17830462 17835068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02235 1 615 EF-hand Containing Proteins AT2G38910 72.536 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre1g02235 Pkinase 8.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02235 K13412 - gmx:100813232 998.808