Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02232 ATGTCACCTGCTAATAATGACCTCAACAAGATGAAAGCAGCCACGACTGATGGTGTGCATGCCTTTCTCAACGATCTCTCCGGTGTTACTTCCAAATCCACTATCAAGGTCAGAATAACTAGATTGTGGGACACTTGGAACGTGGACAAAAAAAAAAAGGGCATGATTAGTACAGACATGGTACTCATGGACGAAAAGCACAATTACATACATGGCACAATACCAAGTAGGTCTGCAAGTGCGTTCAAGGATGTCTTGCAAGAAGGGAAGGTGTATGAGATTGATATTTTCAGAGTCTCGAGAAATAAGAGAACATATATTATAGTTGAAAATAATACTTCCATGCTGCAATTCTCTGGTTCAACAACATTTACGCCTCAGGAATATGATGATGGGAAAATTCCACGCTATGTTTTTGAATTCGTTCCTTTTGAAGAGTTGCACAAGCGATTCAATAAGGAGGCTCACGCAGATGTAATTGGGGTTATTATTGATATGACTCCAATTGAGGAGAGGACAACTGCTTATGGAAAGTCTGATATCATGTCACTCTATTTAAGGAATAAAAGTGGAGACATATTCAAGGTCACATTGTGGGGTGACTTTGTTTCAATGTTTGATAAAAAATTCAAACAATACAAGCATGCTGCTCTTGAGCCAAACGTAGCAATTTTCACATCCATCTTGGTTAAACAATTTCAAGGTGAGTTTTTGGTTCAATCTTCAAGATCCACAACAATTTATATCAACATCGACATTCCAGAAGCTATTGAGCTCGCTCAAGCGTCCAAGGCTGCCAATGTCATGGATGAAAATGCAAATCTTTCACCTCTTGCTGTCCGTCCTAAAATTGACAAAGTAAAGACTTTATCTGAAATTTTGGACATAGCAGCTGCAGGGGATAATATGAGTGCTGTCTACCACTGTGCTGCAACAGTCGAGGACATTTTGGTGAAAAATGGATGGTACTATGTTTCGTGTCCTGAGTGTAGGAAAACTGTGTTTCCTACTGAAACAGATTTTCACTGTGATAATTGCAAAGTGGATGTCGCATATCCAAAGACTAGGTTCCGTTTAGAGCTTCAGGTGAAAGACCCCACCGCTTCAACCATATTTGTATTGTTTGACGATGTTGCTGAGCAGGTGGTGCAGGTTAAGCTAGCTGACCTCACCTCAAATTTAGAAAAGCACTACTTAATGGAAAATGTAAAGGACTCTGAGCTGCCTGAGCAGCTCCTTAAAATCATTGGTACCACACACGTTTTTCAGATTAGGATGGGTTCTTACTTTGAAAGTCGTGGACGACAGAGTTTCACAGCAAATAAAATTTTGAAGCCAGTTGTCAAGGTTGAAGAGGAGGATACCAAGGACGAAATATGTTCTTCCTCGAGTGAGCCTCCTACAATTAAGACACCAATTCCGGCACAAAAAAGAAGAAGATTAATCTTACATTCTTCGCCAGAATCGGGTAATATGGACCAAAAGGATATCGCGGAAGATTTACATGATTGA 1512 0.4008 MSPANNDLNKMKAATTDGVHAFLNDLSGVTSKSTIKVRITRLWDTWNVDKKKKGMISTDMVLMDEKHNYIHGTIPSRSASAFKDVLQEGKVYEIDIFRVSRNKRTYIIVENNTSMLQFSGSTTFTPQEYDDGKIPRYVFEFVPFEELHKRFNKEAHADVIGVIIDMTPIEERTTAYGKSDIMSLYLRNKSGDIFKVTLWGDFVSMFDKKFKQYKHAALEPNVAIFTSILVKQFQGEFLVQSSRSTTIYINIDIPEAIELAQASKAANVMDENANLSPLAVRPKIDKVKTLSEILDIAAAGDNMSAVYHCAATVEDILVKNGWYYVSCPECRKTVFPTETDFHCDNCKVDVAYPKTRFRLELQVKDPTASTIFVLFDDVAEQVVQVKLADLTSNLEKHYLMENVKDSELPEQLLKIIGTTHVFQIRMGSYFESRGRQSFTANKILKPVVKVEEEDTKDEICSSSSEPPTIKTPIPAQKRRRLILHSSPESGNMDQKDIAEDLHD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02232 503 SUPERFAMILY Nucleic acid-binding proteins 286 446 IPR012340 -
Trre1g02232 503 CDD RPA1_DBD_C 290 459 IPR047192 -
Trre1g02232 503 SUPERFAMILY Nucleic acid-binding proteins 23 122 IPR012340 -
Trre1g02232 503 CDD RPA1_DBD_A_like 34 124 - -
Trre1g02232 503 SUPERFAMILY Nucleic acid-binding proteins 139 261 IPR012340 -
Trre1g02232 503 Pfam Replication protein A OB domain 150 248 IPR031657 -
Trre1g02232 503 PANTHER OS03G0429900 PROTEIN 29 470 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre1g02232 503 CDD RPA1_DBD_B_like 158 264 - -
Trre1g02232 503 Gene3D - 278 460 IPR012340 -
Trre1g02232 503 MobiDBLite consensus disorder prediction 454 503 - -
Trre1g02232 503 Pfam Replication factor-A C terminal domain 308 444 IPR013955 -
Trre1g02232 503 Gene3D - 133 271 IPR012340 -
Trre1g02232 503 Gene3D - 22 128 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02232 Trre-Chr1 17779383 17781974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02232 21 426 Core DNA Replication Machinery Family AT5G45400 24.766 2.56e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02232 - - tpra:123910350 734.561