Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02231 ATGCTTCAGCAATTGCCTCCCTATGTAAGAGAACAAGCTGCAAAAACTATGTATTTAGAAGCACATTGTAGGATTCAAGATCCTATTTATGGATGTGTTGGGATTATCTCTAAATTATATCAACAAATCTATGATACAGAAGTTGAGTTGGCCAAAATCCAAACTCAAATTGCTTGTCATAAAATCCAAAATCAACAATTTGAAGCTGAATCCAACTTAAGCTCTTTGCCACCAATGAGTAACAACATGGAGATGGAGCACTTTCAATGGCCTAGTCAAACTCTTAATTAG 291 0.354 MLQQLPPYVREQAAKTMYLEAHCRIQDPIYGCVGIISKLYQQIYDTEVELAKIQTQIACHKIQNQQFEAESNLSSLPPMSNNMEMEHFQWPSQTLN 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02231 96 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
Trre1g02231 96 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 83 - -
Trre1g02231 96 Coils Coil 50 70 - -
Trre1g02231 96 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02231 Trre-Chr1 17773267 17773993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02231 1 58 AS2 family AT3G26660 55.172 1.22e-16 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g02231 LOB 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02231 - - lang:109328513 116.701