Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02221 ATGGCTGAAGTTGCTGTTCAAGAACCTGTTGCAGTTGTTTCAGATCCCTCCCAGCTCGAAGTTAAACTCTTCAGTCGCTGGAGCTTCGATGACGTTCAGCTTTCTGATGTGTATCTGAGTGATTACATTGGAGTTGCGGCAACAAAACATGCGACATATGTTCCACACACTGCTGGAAGATACTCGAATAAGCGATTCAGGAAAGCAAATTGTCCCATTGTTGAGAGACTGACAAACTCACTCATGATGCATGGGAGAAACAATGGAAAGAAGCTTATGGCTGTTAAAATCATCAAGCACACTATGGAAATCATTCATTTGTTAACTGACCAGAACCCAATTCAGGTTATCTGTGATGCTATTATCAACAGTGGTCCCCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTAGTCAGAAGACAGGCCGTGGATATCTCACCCCTTCGCCGTGTTAATCAAGCCATCTATCTTCTAACTACTGGCGCTCGTGAAGCTTCCTTTAGAAATATTAAGACAGTTGCTGAATGTTTGGCTGATGAGCTTATTAATGCAGCAAAAGGTTCATCCAACAGTTATGCGATCAAGAAGAAAGATGAAATTGAGAGAGTTGCCAAGGCAAATCGTTAA 630 0.427 MAEVAVQEPVAVVSDPSQLEVKLFSRWSFDDVQLSDVYLSDYIGVAATKHATYVPHTAGRYSNKRFRKANCPIVERLTNSLMMHGRNNGKKLMAVKIIKHTMEIIHLLTDQNPIQVICDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREASFRNIKTVAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02221 209 CDD uS7_Eukaryote 22 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Trre1g02221 209 Gene3D Ribosomal protein S7 domain 3 209 IPR036823 -
Trre1g02221 209 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 1 209 IPR000235 GO:0006412
Trre1g02221 209 NCBIfam 30S ribosomal protein S7 20 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Trre1g02221 209 FunFam 40S ribosomal protein S5 4 209 - -
Trre1g02221 209 SUPERFAMILY Ribosomal protein S7 22 209 IPR036823 -
Trre1g02221 209 ProSitePatterns Ribosomal protein S7 signature. 75 101 IPR020606 GO:0003723|GO:0003735|GO:0006412
Trre1g02221 209 Pfam Ribosomal protein S7p/S5e 67 209 IPR023798 -
Trre1g02221 209 PANTHER RIBOSOMAL PROTEIN S7 19 209 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02221 Trre-Chr1 17717189 17719546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02221 20 209 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 87.895 1.69e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02221 K02989 - gmx:100305898 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02221 1 17717189 17719546 Trre1g02221 1 17717189 17719546 ECH