Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02209 ATGAGGGGGAGAAGCTACAGTTACAGTCCATCCCCTCCAAGACGTTACGGAGGTCGAAGAGGACGCAGTCCTAGTCCTAGGGGACGTTATGGAGGAGGCCGTTACAGAGGTCGTGATAGGGATTTGCCAACAAGTCTCCTTGTCCGGAACCTGCACAAAGATTGCAGGCCCGAAGATTTGCACGATCCATTTGGCCAGTTTGGTCCTGTCAAGGATATTTACCTGCCTCGTGATTATTATACTGGGGAGCCAAGGGGATTTGGGTTTGTTCAATTTGTGGACCCGGCAGATGCTGCAGATGCAAAACATCACATGGATGGTCAAGTTCTTCTTGGCCGAGAGTTAACTGTCGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGACGATCTCCACGCCGTCGTTCTCGTTCACCACGTTATGCAAGAACCTATTCTCCTAGTCCAGACTATTCACCTTCTCCAAGACAAAGGCGATATTCCAGGTCAATCTCACCAAGGGACACAAGGTATAGGAGGGGATCATACTCTAGGTCCCCTTATAGTAGATCACCTTATGCATCAAGAAGCCCAAGTCGAGGGAGGAGTTACAGCAGGAGCCGTAGTCCAGGGTACTCTAGATGA 663 0.4887 MRGRSYSYSPSPPRRYGGRRGRSPSPRGRYGGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFGQFGPVKDIYLPRDYYTGEPRGFGFVQFVDPADAADAKHHMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSPSPDYSPSPRQRRYSRSISPRDTRYRRGSYSRSPYSRSPYASRSPSRGRSYSRSRSPGYSR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02209 220 MobiDBLite consensus disorder prediction 122 141 - -
Trre1g02209 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Trre1g02209 220 MobiDBLite consensus disorder prediction 154 173 - -
Trre1g02209 220 MobiDBLite consensus disorder prediction 188 220 - -
Trre1g02209 220 SUPERFAMILY RNA-binding domain, RBD 44 150 IPR035979 GO:0003676
Trre1g02209 220 Gene3D - 39 157 IPR012677 -
Trre1g02209 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 115 IPR000504 GO:0003723
Trre1g02209 220 MobiDBLite consensus disorder prediction 122 220 - -
Trre1g02209 220 SMART rrm1_1 45 118 IPR000504 GO:0003723
Trre1g02209 220 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 43 210 - -
Trre1g02209 220 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02209 Trre-Chr1 17623657 17625846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02209 44 163 Eukaryotic Initiation Factors Gene Family AT3G16380 30.000 6.39e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02209 K12900 - gmx:100816913 208.379