Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02207 ATGACACTTCCACTCCTCCTCCGTTTGGCTTCTTCTTCTTCTTCACGGTTCCGTAAACCATTTGGTCTCTTGGCATTTACATTCTCTACCACTTCACCGCCAAATCCACCTCCCATTCGAGTTTCCCTCACCGACTCACTTGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGAGATCTCATCCACTCTGCCGAACCCGCCGTCTGTCACCCTTCACTTTCCTCTCTCCATCCCGTCTGCTACTCATGTCTCGCCACACTCCCTAACCTCTCCTCTCTCTCCCCCTTTTGTTCTCACCGTTGCCACCAACGTAGTAAGGAATATTACGATATTGAGATGAAAGCAAATTGGACGGATTTTGATAACTATTGCCGGGACCAAGGTTTAAAATATCCCTTCCTAGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTACGAGAAGTGACTGTATTGACATACTTCAACCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAGAGGAGTTCACCTTGCTAAGGAATGCTTTCACAAAGGCACTTATTGAAGATGAACAAATTGCATTTTTAACCAAGCAATGGTACATTAGTGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATACTTCCTTCATTTTATAATCATGATTGTGATCCTAATGCACACATTATATGGATAGATAATGCAGTGGCAAAATTAAAGACCCTCCGCGATATTGATGAAGGTGAAGAACTGAGAATCTGCTATATTGATGCCAGTATGGACCGCGATGCTCGACGAAAGCTATTGTTTCGAGGATTTGGATTTCATTGCAATTGTAGTAGGTGTTTGCATGGTGATTAG 951 0.4395 MTLPLLLRLASSSSSRFRKPFGLLAFTFSTTSPPNPPPIRVSLTDSLGRAVFATRPIPTGDLIHSAEPAVCHPSLSSLHPVCYSCLATLPNLSSLSPFCSHRCHQRSKEYYDIEMKANWTDFDNYCRDQGLKYPFLVKRLACMIISGVTRSDCIDILQPANLTPEMILEMEEEFTLLRNAFTKALIEDEQIAFLTKQWYISVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAVAKLKTLRDIDEGEELRICYIDASMDRDARRKLLFRGFGFHCNCSRCLHGD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02207 316 ProSiteProfiles SET domain profile. 37 286 IPR001214 GO:0005515
Trre1g02207 316 Gene3D - 126 210 - -
Trre1g02207 316 SMART set_7 37 292 IPR001214 GO:0005515
Trre1g02207 316 Pfam SET domain 48 285 IPR001214 GO:0005515
Trre1g02207 316 CDD SET_SMYD 225 312 - -
Trre1g02207 316 Gene3D SET domain 50 312 IPR046341 -
Trre1g02207 316 SUPERFAMILY SET domain 36 310 IPR046341 -
Trre1g02207 316 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 35 314 - -
Trre1g02207 316 Gene3D - 81 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02207 Trre-Chr1 17604996 17609812 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g02207 SET 6.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02207 - - tpra:123906125 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02207 1 17604996 17609812 Trre1g02207 1 17604996 17609812 ECH