Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02197 ATGGACAAAAAAAACATTGAAAGAGAAACACATGACTTAATGAATGTTGAGTCATTCTCTCAACTTCCATTCATCCGCCCTCCACCCACCATCAAAGAAAAAGGCATCCGCCTCTTCGGGATCGAATTCGGCGCCACCACGGAAGACAACGAAGACTCCGAGTCACCGGAAACTACTACTACCAACAACATTAACACATTTGATGTTGAAAACAACAACAAAGACAACAATAGTGAAAACAATAGAAGATTTGAATGTCATTATTGTTGTAGAAACTTCCCTACTTCACAAGCTTTAGGTGGTCATCAAAACGCACACAAAAGAGAACGCCAACATGCTAAACGACAACACCTTCAATCAACTATGGTACATGCTACTACTTTCTCTGATCCACATCTTTATCATCATCATCATCAACAACAACAGCATCCTCTTTATAGATTCACATCATCATCACCATCATCATTATCATCATCACCTTCTTATCCAACATGGAACACAAACTCATCAAATTCAACTGGTGCAAGATTTTATAACCATCCAACTTCTTCTTACTCTCATCAACAACCTATTAATGGTAGTCCTTTAGCTTTTTGGCGTATTCCGAATGGCGCCGTTCAGAGTAACCCTAGCTTCAGCCATGAACGACCTCTACCTTTGCTTGCTTCCGAGGAAAGAGCAAATTTGTCGCACGTTAGTCATGGAGTATCTTCTTCTTCTGCATCCCATAATCGCTACGTTTATGACAAACGTAGCGACCATGTTAGTTTGGATCTTCATCTCTAA 786 0.402 MDKKNIERETHDLMNVESFSQLPFIRPPPTIKEKGIRLFGIEFGATTEDNEDSESPETTTTNNINTFDVENNNKDNNSENNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRQHLQSTMVHATTFSDPHLYHHHHQQQQHPLYRFTSSSPSSLSSSPSYPTWNTNSSNSTGARFYNHPTSSYSHQQPINGSPLAFWRIPNGAVQSNPSFSHERPLPLLASEERANLSHVSHGVSSSSASHNRYVYDKRSDHVSLDLHL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02197 261 MobiDBLite consensus disorder prediction 56 74 - -
Trre1g02197 261 MobiDBLite consensus disorder prediction 99 119 - -
Trre1g02197 261 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Trre1g02197 261 MobiDBLite consensus disorder prediction 143 167 - -
Trre1g02197 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Trre1g02197 261 MobiDBLite consensus disorder prediction 45 79 - -
Trre1g02197 261 MobiDBLite consensus disorder prediction 134 167 - -
Trre1g02197 261 SUPERFAMILY beta-beta-alpha zinc fingers 80 112 IPR036236 -
Trre1g02197 261 PANTHER ZINC FINGER PROTEIN GIS 1 261 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02197 Trre-Chr1 17516336 17517121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02197 1 261 C2H2 Transcription Factor Family AT3G58070 39.721 1.08e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02197 - - gmx:100806594 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02197 1 17516336 17517121 Trre1g02197 1 17516336 17517121 ECH