Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02189 ATGGATCTAGGAGGCACTGGTAGTTCCTTCAAAGAAGTTCTTGAGTCTCGTATGATATTTTCAGATTTTGAGACATCTAAGTCTAAATTTGAGGCCAATTGTAATAGTACATTTGCAAAATCAAGGACTTGTGCTGATGGAAAGAATGGAAATCATTCAAAGAATGGGGTGTATGACCTACTCGAGTGCCCTGTTTGCAAGAATTTAATGTATCCCCCAATTCATAAAATAAATGTTGTTTTCTGCCCAAATGGCCACACATTATGTTCAAATTGTAAGATTGTAGTGCATAATCGTTGCCCAACATGTCATCGTGATCTTGGGAATATAAGGTGTTTGGCTTTAGAGAAAGTGGCAGAATCAATGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTCACATACCACACGAAGCTAAAACATGAGCAAAATTGTCGATTTCGTCCATACAATTGCCCCTATGCTGGATCAGAGTGCTCTATAATGTGTGACATTCCAACACTTATGACCCATCTCAAGGAGGATCACAAGGTTGACGTACATGATGGATTCACATTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGTTAACCGTTTTCAATTGTTTTGGAAAGCATTTCTGCTTGCACTTCGAGGCATTTCTACTTGGCACAACTCCAGTTTATATGGCGTTTTTACGATTTTTGGGTGATGAGAAAGAGGCAAAGAAATTCAGGTATAGCTTAGAGGTTGGTGCAAATAGCCGCAAACTAATATGGCAAGGAATTCCAAGGAGCATTCGTGAGAGTCATAGAAAAGTTCGTGACAGTCAGGATGGACTCATCATTCAAAGAAACCTAGCACTTTATTTTTCGGGTAGTGATAAACAACAATTAAAGTTGAGGGTCACCGGTCGTATATGGAAAGAAGAATGA 951 0.387 MDLGGTGSSFKEVLESRMIFSDFETSKSKFEANCNSTFAKSRTCADGKNGNHSKNGVYDLLECPVCKNLMYPPIHKINVVFCPNGHTLCSNCKIVVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCHDIFTYHTKLKHEQNCRFRPYNCPYAGSECSIMCDIPTLMTHLKEDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTTPVYMAFLRFLGDEKEAKKFRYSLEVGANSRKLIWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGSDKQQLKLRVTGRIWKEE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02189 316 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 309 IPR008974 GO:0005515
Trre1g02189 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 111 IPR013083 -
Trre1g02189 316 FunFam E3 ubiquitin-protein ligase SINAT5-like 177 309 - -
Trre1g02189 316 Pfam Seven in absentia protein family 110 309 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre1g02189 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 173 IPR013083 -
Trre1g02189 316 ProSiteProfiles Zinc finger RING-type profile. 63 104 IPR001841 -
Trre1g02189 316 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 50 315 - -
Trre1g02189 316 SUPERFAMILY TRAF domain-like 124 313 - -
Trre1g02189 316 SUPERFAMILY RING/U-box 57 108 - -
Trre1g02189 316 ProSiteProfiles Zinc finger SIAH-type profile. 121 181 IPR013010 GO:0008270
Trre1g02189 316 CDD RING-HC_SIAHs 61 104 - -
Trre1g02189 316 FunFam E3 ubiquitin-protein ligase SINAT3 118 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02189 Trre-Chr1 17438866 17441416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02189 7 316 C3H Transcription Factor Family AT2G41980 75.806 2.75e-175 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02189 K04506 - gmx:100813966 523.472