Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02185 ATGGATTCTCAAAAACCAAACTCAAACCTAACTTTCCCTTCAGCACCACCAGGTTTTATAACTCCAACATTAGATCTGAATCAAGAGCCTTGTGATGAAACACCTCAAACAAACCTAAACCATCAAGAACAAACCCTAACCACCAATAATATGTACTCTGATTTGCACCAACAACAAACCCTAACCATCACTGAGCTTTTCCAAAGCAATACCACCAACAATGCTCCGGCGGGTGAAGTCCCGATACAAAGACTTCAACGACACTTTAAAGAGCTAGTTCGTGTTTCGGATCTCAATTTATCATATCACCAACAATTGCGTGCAATTGTAAGAAAAATAAGAATGTTATATGATTCTGTTCGTCTTTTGGCTGTGGCGGAAGAAGAGAAGCGGCTTGTTGTTCATGCGGAGAAAAACGATGAAAGAGCTTTTGCTGTGATGAGGAGGCATGGTTTGTGTTTGAATCAAGATAAGAGAATTATTGGCACAATTCCTGGAATTTATATTGGGGATGTATTTGTCTATAGAACGGAATTAGCTGTCGTTGGTTTACATGGTAATTTAGAAGCTGACGTTGATTATTTACGTGGTAGCATGAGTTCGAATGGCGAACTGATTGCTACCAGTGTGATTGTTTTTGGTGGATATGAGAATGGTGTTGTTGATCAAGGTGATTTTATTATTTATTCTGGTCATGGTGGTGAGAAGTTAGAAGGTGGGAACCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTTGTGTACAATATGAAGGTATTGTTTCTGTGTTTCATAAGCAGGTTTATTTTTATGATGGTTTGTATAGGATAGTTAAATATTGGGTGGAAGGTAAATCTGGTTTTAATGTCTACAAGTTTAAGTTATTGAGAATCAATAGTCAAGCTAAGATGGATTGTGATGTTTTTAATCCTAGGTGTGTCTTATCTCAGGATATTTCCAACAAGAAGGAGAACGTCGTTATTAGGCTAGTTAATAATATTGATAGGAATCAGGACCCAATATATTTTGAGTATCTTCCGAGGACTAATTTTTCGTCGTTTGTGTCTCATCGGAGTGATAAGGAAATGGGTTGTGAATGTATCGACGGTTGTGTGGATGGATGCTTATGTTTCATGAAGAATGGAAATGAATTTCCATATAGTCAAAATGGAATTCTCTTGAAAGGGAGACCGTTAATTTTTGAATGCGGTCCTTTTTGTCGTTGCCCGCCTCATTGTCGTAATCGTGTTACGCAAAAAGGCCTTAAACACAGGTTGGAAGTGTTTAGATCTAGGGAATCTGGTTGGGGAGTTAGGTCTTTGGACCTTATTGAAGCAGGCACTTTCATATGTGAGTACACCGGGGTTGCTTTGACTAGGGAGCAAGCACAAATTGTTACCATGAATGGTGATACATTGGTTTATCCCAGCGGGTTTGCAAAAAGTTGGACAGAATGGGGTAATTTATCCCCGATAAACACTAGTTATAAACGTCCATCCTATCCATCAATTCCTCCTATTGAGTTTGCCCTTGATGTGTCGAGAATGAGGAACGTTGGTAGCTATATTAGTCATAGTTCAACTCCTAATGTGATGATGCAATATGTTCATTTTGATCACAATAATCTCATCATGTTCCCTCACTTTATGCTATTTGCATTGGAGAACATCCCTCCATCGAGAGAGTTAAGCTTTAATTATAGGCCAGCCGATGGTAACTTGACTGGCTAA 1746 0.3883 MDSQKPNSNLTFPSAPPGFITPTLDLNQEPCDETPQTNLNHQEQTLTTNNMYSDLHQQQTLTITELFQSNTTNNAPAGEVPIQRLQRHFKELVRVSDLNLSYHQQLRAIVRKIRMLYDSVRLLAVAEEEKRLVVHAEKNDERAFAVMRRHGLCLNQDKRIIGTIPGIYIGDVFVYRTELAVVGLHGNLEADVDYLRGSMSSNGELIATSVIVFGGYENGVVDQGDFIIYSGHGGEKLEGGNLAMERSMHYGIEVRVIRCVQYEGIVSVFHKQVYFYDGLYRIVKYWVEGKSGFNVYKFKLLRINSQAKMDCDVFNPRCVLSQDISNKKENVVIRLVNNIDRNQDPIYFEYLPRTNFSSFVSHRSDKEMGCECIDGCVDGCLCFMKNGNEFPYSQNGILLKGRPLIFECGPFCRCPPHCRNRVTQKGLKHRLEVFRSRESGWGVRSLDLIEAGTFICEYTGVALTREQAQIVTMNGDTLVYPSGFAKSWTEWGNLSPINTSYKRPSYPSIPPIEFALDVSRMRNVGSYISHSSTPNVMMQYVHFDHNNLIMFPHFMLFALENIPPSRELSFNYRPADGNLTG 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02185 581 ProSiteProfiles YDG domain profile. 162 302 IPR003105 -
Trre1g02185 581 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 2 581 IPR025794 GO:0016571
Trre1g02185 581 ProSiteProfiles Pre-SET domain profile. 368 426 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g02185 581 SMART G9a_1 157 306 IPR003105 -
Trre1g02185 581 ProSiteProfiles SET domain profile. 429 573 IPR001214 GO:0005515
Trre1g02185 581 SUPERFAMILY SET domain 315 573 IPR046341 -
Trre1g02185 581 Gene3D - 143 315 IPR036987 -
Trre1g02185 581 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 56 573 - -
Trre1g02185 581 Pfam SET domain 440 572 IPR001214 GO:0005515
Trre1g02185 581 SMART preset_2 321 413 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g02185 581 SMART set_7 429 579 IPR001214 GO:0005515
Trre1g02185 581 SUPERFAMILY PUA domain-like 145 310 IPR015947 -
Trre1g02185 581 Pfam Pre-SET motif 324 421 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g02185 581 Gene3D SET domain 316 580 IPR046341 -
Trre1g02185 581 Pfam SAD/SRA domain 161 306 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02185 Trre-Chr1 17416312 17418057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02185 81 572 Su(var)3-9 homologs AT5G04940 35.171 3.94e-85 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g02185 SAD_SRA 3.5e-34 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02185 K11420 - tpra:123885822 820.461