Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02181 ATGGAGCTTGCTTTGAGCTTAGGTGACACACCAAAATTACCCTTTTCTTTTCTTGACAAACCCACAAAAGATCCATTACCAAATTTGTTCTTAACACAACAAGGAAAAACCTTAGACCTTGAAAAAAGTGGTTCTTTAGATCCACCTATTCAACTTGACCTTCTTCCTTTCTCTCCTGTTCTTAGATCTCACCACTCTTCTTCTCACCTTCCCATTCCTTGGCTCACTCAACCATGTGGACAGGTGAGGGAGAGGGAGTTAGATGTGAACCGTTTTCCGGCGATGACGGAGGAGGCCGACGATGGCGCTTCACTGTCATCCCCCAGCAGTTCTGTGTCTCCATTTCCAATGGATTTCAGTATGAGGAACAACAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGTGAGTGATGATGATGAAAATGGTTCAACTCGGAAGAAACTCAGACTTTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTTTAAATCCAAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTAAGTCCACGTCAGGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGCTAAAGCAAACAGAAGTGGATTGTGAGTATTTAAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGGTTACAAAAGGAACTTCAAGAACTTAGAGCTTTGAAAACTAATCAACCATTTTACATGCAACTACCAGCTACCACTTTAACTATGTGTCCTTCTTGTGAACGTGTGGCTACAAACCCTAGCAACAATCAAACCAATAACAACAAGGCTAGAACATTGCATTTCTCTAATGCTCAACAAGCCCAACAACAAAAGGCCCAAGCCCATCAGATTCCTTCATGA 912 0.409 MELALSLGDTPKLPFSFLDKPTKDPLPNLFLTQQGKTLDLEKSGSLDPPIQLDLLPFSPVLRSHHSSSHLPIPWLTQPCGQVRERELDVNRFPAMTEEADDGASLSSPSSSVSPFPMDFSMRNNNAEYGGRNKRENEGEAERVSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNQPFYMQLPATTLTMCPSCERVATNPSNNQTNNNKARTLHFSNAQQAQQQKAQAHQIPS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02181 303 MobiDBLite consensus disorder prediction 97 155 - -
Trre1g02181 303 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355|GO:0043565
Trre1g02181 303 Coils Coil 215 245 - -
Trre1g02181 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 57 288 - -
Trre1g02181 303 SUPERFAMILY Homeodomain-like 146 210 IPR009057 -
Trre1g02181 303 CDD homeodomain 153 210 IPR001356 GO:0003677
Trre1g02181 303 Pfam Homeodomain 153 207 IPR001356 GO:0003677
Trre1g02181 303 MobiDBLite consensus disorder prediction 102 120 - -
Trre1g02181 303 Gene3D - 157 207 - -
Trre1g02181 303 SMART halz 209 252 IPR003106 GO:0006355|GO:0043565
Trre1g02181 303 FunFam Homeobox-leucine zipper protein 18 139 214 - -
Trre1g02181 303 MobiDBLite consensus disorder prediction 284 303 - -
Trre1g02181 303 MobiDBLite consensus disorder prediction 128 155 - -
Trre1g02181 303 SMART HOX_1 151 213 IPR001356 GO:0003677
Trre1g02181 303 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Trre1g02181 303 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02181 Trre-Chr1 17385825 17387974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02181 49 279 Homeobox Transcription Factor Family AT5G47370 53.498 3.20e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre1g02181 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02181 K09338 - gmx:100776113 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02181 1 17385825 17387974 Trre1g02181 1 17385825 17387974 ECH
Trre13g03673 13 44311232 44313100 Trre1g02181 1 17385825 17387974 PCT