Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02180 ATGGGGGAACAATCATCTGGTGAAATTGCAATGGAAATTGATATGAATCAGGAACCATATCCAGACCAATTATCAGTTGCTATTGCTAATATTGGTGCTTTGAATTTGAATGATTCAATTCCACAACCTTTTAATAGATTTGGTAGTAATCTTTACAATCCTGATACATGGGAGCATGTTTTGATTTATCCTCGCAATCGAGGTGAAAAGAAAGAAGCTAGTGAAACTAGTGTTGCTGCATTAAAGAAGAGTAATGATGGAAGTGTTTATGATTGTAATATTTGTTTAGATTTGGCTAAGGAACCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTATATAGATGGTTGAATTTAAGATCTTCGCGAACTCGAACGAAAGAATGTCCTGTTTGCAAGGGTGAAGTTACTGATCAGGATGTTATTCCTATATATGGTGTTGGGAATGATGATGATGAGGTTCGTAATGAGGGTTCTAGCTCCGCAATGGCTCAAATCCCTCGAAGACCTAATGCAAAGCGTGTCTCGAGGGATCCTAATGTGATGCAAATGAGGGATCCTAATGTGATGCAAATGAGGGTTCGAACTCTAGATAGAGGCGCTTCATTTTCAGCTTTATTTAATTTCTCAGAGAGATGA 648 0.3781 MGEQSSGEIAMEIDMNQEPYPDQLSVAIANIGALNLNDSIPQPFNRFGSNLYNPDTWEHVLIYPRNRGEKKEASETSVAALKKSNDGSVYDCNICLDLAKEPVVTCCGHLFCWPCLYRWLNLRSSRTRTKECPVCKGEVTDQDVIPIYGVGNDDDEVRNEGSSSAMAQIPRRPNAKRVSRDPNVMQMRDPNVMQMRVRTLDRGASFSALFNFSER 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02180 215 SMART ring_2 92 135 IPR001841 -
Trre1g02180 215 ProSiteProfiles Zinc finger RING-type profile. 92 136 IPR001841 -
Trre1g02180 215 MobiDBLite consensus disorder prediction 158 179 - -
Trre1g02180 215 SUPERFAMILY RING/U-box 88 154 - -
Trre1g02180 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 188 IPR013083 -
Trre1g02180 215 Pfam RING-type zinc-finger 92 133 IPR027370 -
Trre1g02180 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 70 188 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre1g02180 215 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
Trre1g02180 215 CDD RING-HC_RNF5-like 90 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02180 Trre-Chr1 17371528 17372175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02180 79 195 C3H Transcription Factor Family AT3G58030 51.261 4.49e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02180 K10666 - tpra:123922773 261.922