Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02179 ATGGGAGAACACGAATCTGGTCCAGTTCCAATGGACATTGATGTAAACTTCAATGATGCTATTCATCGTAATGGTGGTACTGTTAGTAATCTTTTTAATCATCGTATTTGGGAAAACGTTACCACTGTTGGATTTCGAAATCGAAGTGTGGTAAGAGTTCCTGAAGTGCCACAAATTAACAATGTTAGTGTTGCTGCATTGGATAAGAGCGAGAAATCAGAGAAAAAGGATAATGCTGAAGATGGTTATGGTGGTGGTAGTGATGGAGGTTTCTTTGATTGTAATATTTGTTTAGATTTGGCTAAAGATCCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCATATATAGATGGTTGTATTTAAGTTCTTCTCGAACTCGAACTAAAGAATGTCCGGTTTGTAAGGGAGAAGTTAGTGATAAGGATGTTATTCCTATATATGGTAGTGGGAATAATGACGAGGTTCGTAATCGTCATGAAGGTTCAAGCTCTGGTGCTCGTCAAATCCCTCGTAGACCTAATGCAAGGCGTGTCTGGAGGGATCCTAATGCAAGGCGTCAATCGAGGGATCATAATGCAAGGCCTGTCTCGAGGGATACTAATGCAAGTCGTGGCTCGAGGGATACTAATGTGGGCCAAATAAGGCATACACATGATCCTTTTGCAACCCGTGTCTCAAGGGATTCTAATGGAAGGTCTGTCACGAGGGATTATAATGCAAGGCCTATCTCGAGGGATACTAATGCAAGTCGTGTCTCGAGGGATTATAATGTGAGCCAAATAATACAGTGGAGAGTAGAAATGAGGATTCAATAG 825 0.4121 MGEHESGPVPMDIDVNFNDAIHRNGGTVSNLFNHRIWENVTTVGFRNRSVVRVPEVPQINNVSVAALDKSEKSEKKDNAEDGYGGGSDGGFFDCNICLDLAKDPVVTCCGHLFCWPCIYRWLYLSSSRTRTKECPVCKGEVSDKDVIPIYGSGNNDEVRNRHEGSSSGARQIPRRPNARRVWRDPNARRQSRDHNARPVSRDTNASRGSRDTNVGQIRHTHDPFATRVSRDSNGRSVTRDYNARPISRDTNASRVSRDYNVSQIIQWRVEMRIQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02179 274 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Trre1g02179 274 SMART ring_2 94 137 IPR001841 -
Trre1g02179 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 73 215 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre1g02179 274 MobiDBLite consensus disorder prediction 177 200 - -
Trre1g02179 274 MobiDBLite consensus disorder prediction 148 249 - -
Trre1g02179 274 SUPERFAMILY RING/U-box 93 144 - -
Trre1g02179 274 ProSiteProfiles Zinc finger RING-type profile. 94 138 IPR001841 -
Trre1g02179 274 Pfam RING-type zinc-finger 94 135 IPR027370 -
Trre1g02179 274 MobiDBLite consensus disorder prediction 229 249 - -
Trre1g02179 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 197 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02179 Trre-Chr1 17368517 17369341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02179 66 181 C3H Transcription Factor Family AT3G58030 53.448 4.87e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02179 K10666 - tpra:123922773 209.149