Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02174 ATGAATTTCTTTTCCTTGCTATTCAAATACTATCAATTATTCACACTCATATTCACTATCATATCCTTTACCAAAGTTAGTTGCTTGAATTTTAATTTCTCAACCTTCCAACAAAATGATGCAAACAACTTGTTACTTAATAACTCATATATACAACGAGGTGCCATACAAGTAACCCCAGATAATAGTCAAAGTTCAATCTCAAATTTATCAGGACGTGCTTGTTACAAAGTTCCTTTCAAAATTGCTTCCTTCAACACCACTTTTGTTCTTAATATAAGTCCTGGAACTTCCTCTGCTGGAGAAGGAATAGCTTTTATCTTAACTTTAGATCCAACTCTCCCTGAAAACAGTGATGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACATATCAAGCCGGAATTCTTGCAGTTGAGTTCGATACACGACAGAGTTCAACCGAAGATGGTCCTGACAACCATGTTGGAATCAACATAAATAGCATCTCCTCAATCACACAAACAACATTATCAAACACTAAGGTGAATCTTTCATCTGGTAAAGATGTGTTTATAAGAATTGAATATTCTAATGATGTAATATCTGTCTTTGGTTCAATGAATGTAAATTCACAAGATTCTATGGAGTCACTATTGGTATCTCCAATTCTTAACCTCTCTTACTATTTTACGCAAGACGTTTATGTCGGTTTCTCTGCTTCAACAAGCAGTTACACTGAGCTAAACTGTGTAAAATCATGGGAGTTTAATGGTGTTGATATTGGTGATAAAAAAAATTACTTGTGGATGTTGATAACAATACCAATAGTATTATTGATGATGATCATAGGTGGATTAGTATTTTTCTTTCTTTATTTTCAAAGGAAAAAAAACTTAGAGATTGAAAAAGATACATATGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCGACTAAAGGAATTGACGAGAGCAACAGGTGGATTCAGCCATCAGAATAAACTTGGCGAAGGTGGATTTGGAACGGTTTACAAGGGTATTCTTCGAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCCAAGAACTCGCGTCAAGGAAAGCAAGAATTTATGGCAGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTAGTGAAACTCGTTGGTTGGTGCTACGAAAGCAAAGAACTTCTTCTTGTATACGAGTTTATGCCAAAAGGAAGTTTGGATAAATACTTGTTTAACCAATCAAGTGAATTAGAAGTACAATATTCAAAAGTACTTGATTGGAAAACTAGGAATAGCGTGATTCGTGATGTAGCGCAAGCATTGGATTATCTTCATGATGGTTGTGAAAGAAGGGTACTCCATAGAGATATTAAAGCAAGCAACATAATGTTGGATTTAGATTACACCGCAAAATTAGGTGATTTTGGATTAGCGCGTACAGTTCAAAAGAGAAATGAAACTCATCACTCCACAAAGGAAATTGCAGGAACACCAGGTTATATGGCACCGGAAAGTTTTCTAACAGGAAGAGCGACAGTCGAAACAGATGTGTATGCATTTGGTGTACTTGTTTTAGAAGTTGTGTGTGGGAGAAGACCAGGAAATGTGTTTGCACAAGAGGATTATAAAAATAGTATTGTGTATCAAGTTTGGGAGCTTTATGGAAAAGGTGAAATTGTTAGTGTTGTGGATAAAAGGATAAGTTGTGAAGAGGATGAGGTTGAGAGGGTAAAATGGGAAGAAGAAATTGAAATTGTGCTTGTTCTTGGTTTGGCATGTTGTCATCCAAATCCAAATGAAAGACCATCAATGAAAACTGTTTTAATGGTTCTAAATGGAGAAGCTTCTCCTCCAATTGTTCCAATGGAAAGACCTTCTTTTGTTTGGCCAGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGAACACTCAGTCCATTCACTCAACTTAGTGGAAGATAA 1995 0.3589 MNFFSLLFKYYQLFTLIFTIISFTKVSCLNFNFSTFQQNDANNLLLNNSYIQRGAIQVTPDNSQSSISNLSGRACYKVPFKIASFNTTFVLNISPGTSSAGEGIAFILTLDPTLPENSDGQWLGIVNASTNGTYQAGILAVEFDTRQSSTEDGPDNHVGININSISSITQTTLSNTKVNLSSGKDVFIRIEYSNDVISVFGSMNVNSQDSMESLLVSPILNLSYYFTQDVYVGFSASTSSYTELNCVKSWEFNGVDIGDKKNYLWMLITIPIVLLMMIIGGLVFFFLYFQRKKNLEIEKDTYGGIEDQIQHSSMAPKKYRLKELTRATGGFSHQNKLGEGGFGTVYKGILRNNKEIAVKRVSKNSRQGKQEFMAEVTTIGSLHHKNLVKLVGWCYESKELLLVYEFMPKGSLDKYLFNQSSELEVQYSKVLDWKTRNSVIRDVAQALDYLHDGCERRVLHRDIKASNIMLDLDYTAKLGDFGLARTVQKRNETHHSTKEIAGTPGYMAPESFLTGRATVETDVYAFGVLVLEVVCGRRPGNVFAQEDYKNSIVYQVWELYGKGEIVSVVDKRISCEEDEVERVKWEEEIEIVLVLGLACCHPNPNERPSMKTVLMVLNGEASPPIVPMERPSFVWPAMPSSFKEGEDNSLINGTLSPFTQLSGR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02174 664 CDD STKc_IRAK 337 619 - -
Trre1g02174 664 FunFam Probable L-type lectin-domain containing receptor kinase S.5 28 261 - -
Trre1g02174 664 Pfam Protein tyrosine and serine/threonine kinase 333 615 IPR001245 GO:0004672|GO:0006468
Trre1g02174 664 ProSiteProfiles Protein kinase domain profile. 331 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02174 664 PANTHER - 48 627 - -
Trre1g02174 664 Gene3D Phosphorylase Kinase; domain 1 305 406 - -
Trre1g02174 664 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 253 IPR013320 -
Trre1g02174 664 SMART serkin_6 331 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02174 664 Gene3D Transferase(Phosphotransferase) domain 1 407 623 - -
Trre1g02174 664 CDD lectin_legume_LecRK_Arcelin_ConA 29 253 IPR001220 GO:0030246
Trre1g02174 664 Pfam Legume lectin domain 29 257 IPR001220 GO:0030246
Trre1g02174 664 FunFam probable L-type lectin-domain containing receptor kinase S.5 407 623 - -
Trre1g02174 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre1g02174 664 Gene3D - 27 262 - -
Trre1g02174 664 FunFam Probable L-type lectin-domain containing receptor kinase S.5 316 406 - -
Trre1g02174 664 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Trre1g02174 664 SUPERFAMILY Protein kinase-like (PK-like) 313 617 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02174 Trre-Chr1 17315446 17317440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02174 4 633 Receptor kinase-like Gene Family AT5G55830 36.087 7.31e-121 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02174 PK_Tyr_Ser-Thr 7.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02174 - - tpra:123883598 1070.46