Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02172 ATGAGCTTCATGTCTTTGCTACTCAAATATCATATATTTTCACTCATATTCACTATCATATCCTTTACCAAAGTTAGTTGCTTGAATTTTAATTTCTCAACCTTTCAACAAAATGATGCAAACAGATTGATACTACTCAATAACTCATATATACAACAAAGTGCTATCCAAGTAACCCCAGATAATAGTAAAACTTCAATATCTAATTTATCTGGACGTGCTTTATACAAAGATCCATTCAAAATTGCTTCTTTCAACACCACTTTTGTTCTCAATATAACTCCTGAAACTTCCCTTGGTGGAGAAGGCATAGCTTTTATCTTAACTTCAGATCCAACTCTCCCTCAAAACAGTGATGGACACTGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCGAGCCGCGGTTCTTGCAGTTGAGTTTGATACACGAAAGAGTTCAACCGAAGACGGTCCAAACAACCATGTTGGAATCAATATAAACAGCATATCTTCATTGAAACAAGCATCATTATCAAACACTAAGGTGAATCTTTCATCTGGTTTAGATGTATTTATAAGAATTGAATATTCTAATGATGTAATATCTGTTTTTGGTTCAATGAATGAAACTTCAAATGATTCTATGGAGCCCCTTTTGGTATCTCCATCTCTTAATCTCTCTTCCTATCTTGAACAAGAGGTTTACGTCGGTTTCTCTGCTTCAACAAGCAATTACACAGAGCTAAATTGTGTAAAAGCATGGGAATTCATTGGTGTAGATATTAGTGATAAAATAAATTACTTGTGGATTTTGATTATAATACCAATAGTAATATTGATGATAATCATAGGTGGATTAGTCTTTTTTTTCCTTTATTTTCAAAGAAAAAAAAACATGGAGATTGAAGAAGATACATATGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGGAATTGATGAAAGCAACAGGTGGATTCAGCCTTCAAAACAAACTTGGTGAAGGTGGATTTGGAACGGTTTATAAGGGCATTCTTGGAAACAATAAAGAGATAGCTGTGAAGAGAGTCTCGAAGAACTCGCGCCAAGGTTATATGGCACCCGAAACTTTCTTAACCGGAAGAGCAACGGTTGAAACAGATGTTTACGGATTTGGTGTACTTGTTTTGGAAGTTGTGTGTAGAAAAACACCAGGAAATGTGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGTGCTGCGGATAAAAGGATAAGTTATGAAGAGGAAGAAGTTGAAACTGTGCTTGTTCTTGGGTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAATGGAGAAATTTCTCCTCCAAATGTTCCAATGGAAAGACCTGCTTTTGTTTGGCCTGCTATGCCTTCATCTTTCAAACATGGTGAAGATAGTTCTCTTGTCAATGGAACTCTCACTCCATTCTCTCAACTTAGTGGCAGATAG 1557 0.3571 MSFMSLLLKYHIFSLIFTIISFTKVSCLNFNFSTFQQNDANRLILLNNSYIQQSAIQVTPDNSKTSISNLSGRALYKDPFKIASFNTTFVLNITPETSLGGEGIAFILTSDPTLPQNSDGHWLGIVNASTNGTSRAAVLAVEFDTRKSSTEDGPNNHVGININSISSLKQASLSNTKVNLSSGLDVFIRIEYSNDVISVFGSMNETSNDSMEPLLVSPSLNLSSYLEQEVYVGFSASTSNYTELNCVKAWEFIGVDISDKINYLWILIIIPIVILMIIIGGLVFFFLYFQRKKNMEIEEDTYGGIEDQIQHSSMAPKKYQLKELMKATGGFSLQNKLGEGGFGTVYKGILGNNKEIAVKRVSKNSRQGYMAPETFLTGRATVETDVYGFGVLVLEVVCRKTPGNVYAQDDYKNSIVYWVWELYGKGEIVSAADKRISYEEEEVETVLVLGLACCHPNPNERPSMKTVLMVLNGEISPPNVPMERPAFVWPAMPSSFKHGEDSSLVNGTLTPFSQLSGR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02172 518 Pfam Legume lectin domain 28 255 IPR001220 GO:0030246
Trre1g02172 518 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 252 IPR013320 -
Trre1g02172 518 Gene3D - 26 260 - -
Trre1g02172 518 Gene3D Transferase(Phosphotransferase) domain 1 336 489 - -
Trre1g02172 518 PANTHER - 48 363 - -
Trre1g02172 518 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Trre1g02172 518 SUPERFAMILY Protein kinase-like (PK-like) 368 493 IPR011009 -
Trre1g02172 518 CDD lectin_legume_LecRK_Arcelin_ConA 28 252 IPR001220 GO:0030246
Trre1g02172 518 FunFam Probable L-type lectin-domain containing receptor kinase S.5 27 261 - -
Trre1g02172 518 SUPERFAMILY Protein kinase-like (PK-like) 313 366 IPR011009 -
Trre1g02172 518 Pfam Protein tyrosine and serine/threonine kinase 362 469 IPR001245 GO:0004672|GO:0006468
Trre1g02172 518 ProSiteProfiles Protein kinase domain profile. 331 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02172 Trre-Chr1 17311210 17313183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02172 368 494 Receptor kinase-like Gene Family AT3G45330 38.235 9.66e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02172 Lectin_legB 4.6e-56 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02172 - - tpra:123883598 520.39