Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02171 ATGTCCAATTTAGCAGGACGTGCTTTATACAAAGATCCATTCAAAATTGCTTCCTTCAACACCACTTTTGTTCTCAATATAACTCCTAAAACTTCCCCTGGTGGTGGAGAAGGCATAGCTTTTATCTTAGCTTCAGATAAAACTCTCCCTGAAAACAGTGATGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTCGATACACGAAAGAGTTCAACCGAAGACGGTCCTGATAACCATGTTGGAATCAACATAAATAGTATCTCCTCAATCATACAAGCATCATTATCAGACACTAAGGTGAATCTTACATCTAGTACAAATGTTTATATAAGAGTTGAATATTCTAATGATGTGATATCTGTTTTTGGTTCAATGACTGAAAATTCAAATGATTCTATGGAGACCCTTTTGGTATCTCCAACTCTTAATCTCTCTTCATATTTTAAAGACGAGGTTTATGTCGGTTTCTCTGCTTCAACAAGCAATTACACAGAGTTAAACTGTTTGAGAGCATGGGAATTCATTAGTGTAGATATTGGTAATAAAAAAAATTACTTGTGGATTTGGATTATAATTCCATTGGTCATAATCATAGGTGGATTAGTCTTTTTCATGGTATATTTTCTAAGGAAAAAAAGCATGGAGCCTCAAGAAGATACATATAAAGGGATAGAAGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGGAATTGATGAAAGCAACAGGTGGATTCAGCCCTCAGAATAAACTTGGCGAAGGTGGATTTGGAATGGTTTATAAGGGTATTCTTGGAAACAATAAAGAGATAGCTGTGAAGAGAGTTTCAAAGAACTCGCGCCAGGGAAAACAAGAATTTATGGCAGAAGTTACAACAATTGGAAGCCTTCACCACAAAAACTTGGTGAAACTCATTGGTTGGTGCTACGAAAGCAAAGACAAAGAACTTCTCCTTGTTTACGAGTTTATGCCAAAAGGAAGTTTGGATAAATACTTATTTAACCAATCAAGTGAATTAGAATTACAATATTCGAAAGTTCTTGATTGGAAAACAAGAAATAGCGTGATTCGTGATGTCGCTCAAGCATTGGATTATCTTCACAATGGATGTGAGAAAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATATTGGATTTAGATTATGTTGCAAAATTGGGTGATTTTGGATTGGCGCGTACAATTCAAAAGAGAAATGAAACTCATCATTCAACAAAGGGAATTGCTGGAACACCAGGTTATATGGCACCTGAAACTTTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTGTATGCATTTGGTGTTCTTGTTTTAGAAGTTGTGTGTGGAAGAAGACCTGGAAATGTGTATGCCCAAGATGAATATAATGAATATAATAATAGTATTGTGTATTGGGTTTGGGAGCTTTACGGAAAAGGCGAAATTGTTAGTGTTGTGGATCAAAGGATAAGTTCTGAAGAGAATGAAGTTGAGAGGGTAAAGTGGGAAGAAATGGAAATTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACGGTTTTGATGGTTCTAAATGGAGAAGTTTCTCCTCCAATTGTTCCAATGGAAAGACCTTCTTTTGTATGGCCTGCTATGCCTTCATCTTTCGAACATTGCGAAGATAGCTCGCTTATCAGTGGAACTCTCACTCCTATCACTGAACTTAGTGGCAGATAG 1803 0.3666 MSNLAGRALYKDPFKIASFNTTFVLNITPKTSPGGGEGIAFILASDKTLPENSDGQWLGIVNASTNGTSRAAILAVEFDTRKSSTEDGPDNHVGININSISSIIQASLSDTKVNLTSSTNVYIRVEYSNDVISVFGSMTENSNDSMETLLVSPTLNLSSYFKDEVYVGFSASTSNYTELNCLRAWEFISVDIGNKKNYLWIWIIIPLVIIIGGLVFFMVYFLRKKSMEPQEDTYKGIEDQIQHSSMAPKKYQLKELMKATGGFSPQNKLGEGGFGMVYKGILGNNKEIAVKRVSKNSRQGKQEFMAEVTTIGSLHHKNLVKLIGWCYESKDKELLLVYEFMPKGSLDKYLFNQSSELELQYSKVLDWKTRNSVIRDVAQALDYLHNGCEKRVLHRDIKASNIILDLDYVAKLGDFGLARTIQKRNETHHSTKGIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGRRPGNVYAQDEYNEYNNSIVYWVWELYGKGEIVSVVDQRISSEENEVERVKWEEMEIVLVLGLACCHPNPNERPSMKTVLMVLNGEVSPPIVPMERPSFVWPAMPSSFEHCEDSSLISGTLTPITELSGR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02171 600 SMART serkin_6 263 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02171 600 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 235 340 - -
Trre1g02171 600 FunFam probable L-type lectin-domain containing receptor kinase S.5 341 559 - -
Trre1g02171 600 Pfam Legume lectin domain 5 194 IPR001220 GO:0030246
Trre1g02171 600 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524
Trre1g02171 600 ProSiteProfiles Protein kinase domain profile. 263 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02171 600 Gene3D - 1 198 - -
Trre1g02171 600 SUPERFAMILY Protein kinase-like (PK-like) 245 553 IPR011009 -
Trre1g02171 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre1g02171 600 CDD STKc_IRAK 269 555 - -
Trre1g02171 600 CDD lectin_legume_LecRK_Arcelin_ConA 1 189 IPR001220 GO:0030246
Trre1g02171 600 PANTHER - 5 560 - -
Trre1g02171 600 Gene3D Phosphorylase Kinase; domain 1 237 340 - -
Trre1g02171 600 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 187 IPR013320 -
Trre1g02171 600 Pfam Protein tyrosine and serine/threonine kinase 266 551 IPR001245 GO:0004672|GO:0006468
Trre1g02171 600 Gene3D Transferase(Phosphotransferase) domain 1 341 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02171 Trre-Chr1 17306607 17308409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02171 16 565 Receptor kinase-like Gene Family AT3G53810 38.062 3.86e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02171 PK_Tyr_Ser-Thr 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02171 - - tpra:123883598 962.214