Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02167 ATGAACTTCTTTTCCTTGCTATTCAAATACTATCAATTATTCACACTCATATTCACTATCAAAGTTAGTTGCTTGAATTTTAATTTCTCAACCTTCCAACCAAATGATGCAAGCAAATTGTTACTCAATTATTCATATATACAAGGAGGTGCAATACAAGTAACCTCAGATAATCGTCAAAGTTCAATCTCCAATTTATCAGGACGTGCTTGTTACAAAGAACCTTTCAAAATTGCTTCATTCAACACCACTATTACTCTCAATATAAGTCCTGTAACTTCCCCTGGTGGTGGAGAAGGCATAGCTTTTATCATAGCTTCAGATCCAACTCTCCCTGAAAACAGTGATGGACAATGGCTTGGTACTGTAAATGCTTCCACTAATGGAACTTATCAAGCCGGAATTCTTGCAGTTGAGTTCGATACACGACAGAGTTCAACCGAAGACGGTCCTGACAACCATGTTGGAATCAATATCAATAGCATCTCCTCTTTGATCAAAGCATCATTATCAAACACAAAGGTGAATCTTTCATCTGGTTCAGATGTATTTATAAGAATTGAATATTCTTCTTCTAATGATGTGATATCAGTTTTTGGTTCTATGACTGAAAATTCAAATGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTCCTATTTAAAACAAAAGGTTTATGTTGGTTTCTCTGGTTCAACAAGCAATTACACAGAGCTAAACTGTGTTAAAGCATGGGAATTCAATGGTGTAGAAGAGACGCATAGTAAGAAAAATAAACTCTTGCCAGTTTGGATTATAGTTCCTATGGTGATAATCCTTTGTGTATTGGTCTTTTTCTTGGCTTACTTTCAAAGGAAAAAAAACACAGAGATTCAAGAAGATACATATGGAGGGATAGAGGATCAAATTCAACACTCATCCACGGCTCCAAAGAAATATCGACTAAAGGAATTGAGTAAAGCAACAGGTGGATTCAGCCATCAGAATAAACTTGGCGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGGAAACAACAAAGAAATAGCTGTGAAGAGAATCTCCAAGAACTCGCGTCAAGGAAAGCAAGAATTTATGGCTGAAGTTACAACAATCGGAAGCCTTCACCATAAAAACTTAGTAAAACTCGTTGGTTGGTGCTACGAAAAGAAAGAGCTTCTCCTTGTTTATGAGTTCATGCCTAAAGGAAGCTTAGACAAATACCTATTTAACCAATCAAGTGAATTAGAATTACAATATTCAAAAGTACTTGATTGGAAAACTAGGAATAACGTGATTCGTGATGTAGCGCAAGCAATGGATTATCTTCATGATGGTTGTGAAAGAAGGGTACTCCATAGAGATATTAAAGCAAGTAACATAATGTTGGATTTAGATTACACCGCAAAATTAGGTGATTTTGGATTAGCGCGTACAGTTCAAAAGAGAAATGAAACTCATCACTCCACAAAGGAAATTGCAGGAACACCAGGTTATATGGCACCGGAAAGTTTTCTAACAGGAAGAGCGACAGTCGAAACAGATGTGTATGCATTTGGTGTACTTGTTTTAGAAGTTGTGTGTGGGAGAAGACCAGGAAATGTGTTTGCACAAGAGGATTATAAAAATAGTATTGTGTATCAGGTTTGGGAGCTTTATGGAAAAGGTGAAATTGTTAGTGTTGTGGATAAAAGGATAAATTGTGAAGAGGATGAGAGGGTAAAATGGGAAGAAGAAATTGAAATTGTGCTTGTTCTTGGTTTGGCATGTTGTCATCCAAATCCAAATGAAAGACCATCAATGAAAACTGTTTTAATGGTTCTAAATGGTGAAGCTTCTCCTCCAATTGTTCCAATGGAAAGACCTTCTTTTGTTTGGCCTGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGAACACTCAGTCCATTCACTCAACTTAGTGGAAGATAA 1983 0.3656 MNFFSLLFKYYQLFTLIFTIKVSCLNFNFSTFQPNDASKLLLNYSYIQGGAIQVTSDNRQSSISNLSGRACYKEPFKIASFNTTITLNISPVTSPGGGEGIAFIIASDPTLPENSDGQWLGTVNASTNGTYQAGILAVEFDTRQSSTEDGPDNHVGININSISSLIKASLSNTKVNLSSGSDVFIRIEYSSSNDVISVFGSMTENSNDSMETLLVSPPLNLSSYLKQKVYVGFSGSTSNYTELNCVKAWEFNGVEETHSKKNKLLPVWIIVPMVIILCVLVFFLAYFQRKKNTEIQEDTYGGIEDQIQHSSTAPKKYRLKELSKATGGFSHQNKLGEGGFGTVYKGILGNNKEIAVKRISKNSRQGKQEFMAEVTTIGSLHHKNLVKLVGWCYEKKELLLVYEFMPKGSLDKYLFNQSSELELQYSKVLDWKTRNNVIRDVAQAMDYLHDGCERRVLHRDIKASNIMLDLDYTAKLGDFGLARTVQKRNETHHSTKEIAGTPGYMAPESFLTGRATVETDVYAFGVLVLEVVCGRRPGNVFAQEDYKNSIVYQVWELYGKGEIVSVVDKRINCEEDERVKWEEEIEIVLVLGLACCHPNPNERPSMKTVLMVLNGEASPPIVPMERPSFVWPAMPSSFKEGEDNSLINGTLSPFTQLSGR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02167 660 SMART serkin_6 329 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02167 660 Gene3D Phosphorylase Kinase; domain 1 303 404 - -
Trre1g02167 660 PANTHER - 53 623 - -
Trre1g02167 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre1g02167 660 FunFam Probable L-type lectin-domain containing receptor kinase S.5 314 404 - -
Trre1g02167 660 CDD STKc_IRAK 335 615 - -
Trre1g02167 660 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Trre1g02167 660 ProSiteProfiles Protein kinase domain profile. 329 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02167 660 Pfam Legume lectin domain 25 262 IPR001220 GO:0030246
Trre1g02167 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 267 IPR013320 -
Trre1g02167 660 Pfam Protein tyrosine and serine/threonine kinase 331 611 IPR001245 GO:0004672|GO:0006468
Trre1g02167 660 CDD lectin_legume_LecRK_Arcelin_ConA 25 252 IPR001220 GO:0030246
Trre1g02167 660 FunFam probable L-type lectin-domain containing receptor kinase S.5 405 619 - -
Trre1g02167 660 SUPERFAMILY Protein kinase-like (PK-like) 311 613 IPR011009 -
Trre1g02167 660 Gene3D - 23 267 - -
Trre1g02167 660 Gene3D Transferase(Phosphotransferase) domain 1 405 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02167 Trre-Chr1 17276804 17278786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02167 25 629 Receptor kinase-like Gene Family AT5G55830 35.385 5.09e-118 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02167 PK_Tyr_Ser-Thr 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02167 - - tpra:123883598 1108.59