Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02166 ATGAGCTTCATGTCTTTGCTACTCAAATATCATATATTTTCACTCATATTCACTATCATATCCTTTACCAAAGTTAGTTGCTTGAATTTTAATTTCTCAACCTTTCAACAAAATGATGCAAACAGATTGATACTACTCAATAACTCATATATACAACAAAGTGCTATCCAAGTAACCCCAGATAATAGTAAAACTTCAATATCTAATTTATCTGGACGTGCTTTATACAAAGATCCATTCAAAATTGCTTCTTTCAACACCACTTTTGTTCTCAATATAACTCCTGAAACTTCCCTTGGTGGAGAAGGCATAGCTTTTATCTTAGCTTCAGATCCAACTCTCCCTAAAAATAGTGATGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTCGATACACGACAGAGTTCAACCGAAGACGGTCCAAACAACCATGTTGGAATCAATATAAACAGCATATCTTCATTGAAACAAGCATCATTATCAAACACTAAGGTGAATCTTTCATCTGGTTTAGATGTATTTATAAGAATTGAATATTCTAATGATGTAATATCTGTTTTTGGTTCAATGAATGAAACTTCAAATGATTCTATGGAGACCCTTTTGGTATCTCCATCTCTTAATCTCTCTTCCTATCTTGAACAAGAGGTTTACGTCGGTTTCTCTGCTTCAACAAGCAATTACACAGAGCTAAATTGTGTAAAAGCATGGGAATTCAATGGTGTAGATATTAGTGATAAAAAAAATTACTTGTGGATTTTAATTATAATACCAATAGTAATATTGATGATAATCATAGGTGGATTAGTCTTTTTTTTCCTTTATTTTCAAAGAAAAAAAAACATGCAGATTGAAGAAGATACATATGGAGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGGAATTGATGAAAGCAACATCCGGATTCAGCCATCAGAATAAACTTGGCGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGGAAACAACAAAGAGATAGCTGTGAAGAGAGTTTCGAAGAACTCGCGCCAAGGTAAACAAGAATTTATAGCAGAAGTTACAACAATTGGAAGCCTTCACCATAAAAACTTGGTGAAACTCATCGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTTGTTTACGAGTTTATGCCAAATGGAAGTTTGGATAAATACTTGTATAACCAATCAAGTGAGTTAGAAGTACAGTATTCAAAAGTACTTGATTGGAAAACAAGAAATAGCGTGATTCGTGATGTCGCACAAGCATTGGATTATCTTCACAATGGATGCGAAAAAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATGTTGGACTTGGACTACATTGCAAAATTAGGTGATTTTGGATTGGCGCGTACAATTCAAAAGAGAAACGAAACTCATCATTCAACAAAGGAAATTGCTGGGACACCAGGTTATATGGCACCCGAAACTTTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTTTACGGATTTGGTGTACTTGTTTTGGAAGTTGTGTGTAGAAAAACACCAGGAAATGTGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGTGTTGCGGATAAAAGGATAAGTTATGAAGAGGAAGAAGTTGAAACTGTGCTTGTTCTTGGGTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAATGGAGAAATCTCTCCTCCAAATGTTCCAATGGAAAGACCTGCTTTTGTTTGGCCTGTTATGCCTTCATCTTTCAAACATGGTGAAGATAGTTCTCTTGTCAATGGAACTCTCACTCCATTCTCTCAACTTAGTGGCAGATAG 1971 0.3567 MSFMSLLLKYHIFSLIFTIISFTKVSCLNFNFSTFQQNDANRLILLNNSYIQQSAIQVTPDNSKTSISNLSGRALYKDPFKIASFNTTFVLNITPETSLGGEGIAFILASDPTLPKNSDGQWLGIVNASTNGTSRAAILAVEFDTRQSSTEDGPNNHVGININSISSLKQASLSNTKVNLSSGLDVFIRIEYSNDVISVFGSMNETSNDSMETLLVSPSLNLSSYLEQEVYVGFSASTSNYTELNCVKAWEFNGVDISDKKNYLWILIIIPIVILMIIIGGLVFFFLYFQRKKNMQIEEDTYGGGIEDQIQHSSMAPKKYQLKELMKATSGFSHQNKLGEGGFGTVYKGILGNNKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYESKELLLVYEFMPNGSLDKYLYNQSSELEVQYSKVLDWKTRNSVIRDVAQALDYLHNGCEKRVLHRDIKASNIMLDLDYIAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYGFGVLVLEVVCRKTPGNVYAQDDYKNSIVYWVWELYGKGEIVSVADKRISYEEEEVETVLVLGLACCHPNPNERPSMKTVLMVLNGEISPPNVPMERPAFVWPVMPSSFKHGEDSSLVNGTLTPFSQLSGR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02166 656 Pfam Protein kinase domain 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02166 656 SMART serkin_6 332 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02166 656 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Trre1g02166 656 Pfam Legume lectin domain 28 260 IPR001220 GO:0030246
Trre1g02166 656 PANTHER - 48 613 - -
Trre1g02166 656 FunFam Probable L-type lectin-domain containing receptor kinase S.5 27 261 - -
Trre1g02166 656 FunFam Probable L-type lectin-domain containing receptor kinase S.5 317 407 - -
Trre1g02166 656 FunFam probable L-type lectin-domain containing receptor kinase S.5 408 615 - -
Trre1g02166 656 CDD STKc_IRAK 338 611 - -
Trre1g02166 656 CDD lectin_legume_LecRK_Arcelin_ConA 28 253 IPR001220 GO:0030246
Trre1g02166 656 SUPERFAMILY Protein kinase-like (PK-like) 314 609 IPR011009 -
Trre1g02166 656 Gene3D Transferase(Phosphotransferase) domain 1 408 615 - -
Trre1g02166 656 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 256 IPR013320 -
Trre1g02166 656 Gene3D - 26 264 - -
Trre1g02166 656 ProSiteProfiles Protein kinase domain profile. 332 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02166 656 Gene3D Phosphorylase Kinase; domain 1 306 407 - -
Trre1g02166 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02166 Trre-Chr1 17272992 17274962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02166 12 625 Receptor kinase-like Gene Family AT5G55830 36.960 3.69e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02166 Pkinase 5.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02166 - - tpra:123883598 1039.64