Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02165 ATGAGCTTCATGTCTTTGCTACTCAAATATCATATATTTTCACTCATATTCACTATCATATCCTTTACCAAAGTTAGTTGCTTGAATTTTAATTTCTCAACCTTTCAACAAAATGATGCAAACAGATTGATACTACTCAATAACTCATATATACAACAAAGTGCTATCCAAGTAACCCCAGATAATAGTAAAACTTCAATATCTAATTTATCTGGACGTGCTTTATACAAAGATCCATTCAAAATTGCTTCTTTCAACACCACTTTTGTTCTCAATATAACTCCTGAAACTTCCCTTGGTGGAGAAGGCATAGCTTTTATCTTAGCTTCAGATCCAACTCTCCCTAAAAATAGTGATGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTCGATACACGACAGAGTTCAACCGAAGACGGTCCAAACAACCATGTTGGAATCAATATAAACAGCATATCTTCATTGAAACAAGCATCATTATCAAACACTAAGGTGAATCTTTCATCTGGTTTAGATGTATTTATAAGAATTGAATATTCTAATGATGTAATATCTGTTTTTGGTTCAATGAATGAAACTTCAAATGATTCTATGGAGACCCTTTTGGTATCTCCATCTCTTAATCTCTCTTCCTATCTTGAACAAGAGGTTTACGTCGGTTTCTCTGCTTCAACAAGCAATTACACAGAGCTAAATTGTGTAAAAGCATGGGAATTCAATGGTGTAGATATTAGTGATAAAAAAAATTACTTGTGGATTTTAATTATAATACCAATAGTAATATTGATGATAATCATAGGTGGATTAGTCTTTTTTTTCCTTTATTTTCAAAGAAAAAAAAACATGCAGATTGAAGAAGATACATATGGAGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGGAATTGATGAAAGCAACATCCGGATTCAGCCATCAGAATAAACTTGGCGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGGAAACAACAAAGAGATAGCTGTGAAGAGAGTTTCGAAGAACTCGCGCCAAGGTTATATGGCACCCGAAACTTTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTTTACGGATTTGGTGTACTTGTTTTGGAAGTTGTGTGTAGAAAAACACCAGGAAATGTGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGTGTTGCGGATAAAAGGATAAGTTATGAAGAGGAAGAAGTTGAAACTGTGCTTGTTCTTGGGTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAATGGAGAAATCTCTCCTCCAAATGTTCCAATGGAAAGACCTGCTTTTGTTTGGCCTGTTATGCCTTCATCTTTCAAACATGGTGAAGATAGTTCTCTTGTCAATGGAACTCTCACTCCATTCTCTCAACTTAGTGGCAGATAG 1560 0.3538 MSFMSLLLKYHIFSLIFTIISFTKVSCLNFNFSTFQQNDANRLILLNNSYIQQSAIQVTPDNSKTSISNLSGRALYKDPFKIASFNTTFVLNITPETSLGGEGIAFILASDPTLPKNSDGQWLGIVNASTNGTSRAAILAVEFDTRQSSTEDGPNNHVGININSISSLKQASLSNTKVNLSSGLDVFIRIEYSNDVISVFGSMNETSNDSMETLLVSPSLNLSSYLEQEVYVGFSASTSNYTELNCVKAWEFNGVDISDKKNYLWILIIIPIVILMIIIGGLVFFFLYFQRKKNMQIEEDTYGGGIEDQIQHSSMAPKKYQLKELMKATSGFSHQNKLGEGGFGTVYKGILGNNKEIAVKRVSKNSRQGYMAPETFLTGRATVETDVYGFGVLVLEVVCRKTPGNVYAQDDYKNSIVYWVWELYGKGEIVSVADKRISYEEEEVETVLVLGLACCHPNPNERPSMKTVLMVLNGEISPPNVPMERPAFVWPVMPSSFKHGEDSSLVNGTLTPFSQLSGR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02165 519 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 256 IPR013320 -
Trre1g02165 519 ProSiteProfiles Protein kinase domain profile. 332 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02165 519 CDD lectin_legume_LecRK_Arcelin_ConA 28 253 IPR001220 GO:0030246
Trre1g02165 519 Gene3D - 26 264 - -
Trre1g02165 519 Pfam Protein tyrosine and serine/threonine kinase 366 470 IPR001245 GO:0004672|GO:0006468
Trre1g02165 519 Gene3D Transferase(Phosphotransferase) domain 1 333 490 - -
Trre1g02165 519 FunFam Probable L-type lectin-domain containing receptor kinase S.5 27 261 - -
Trre1g02165 519 SUPERFAMILY Protein kinase-like (PK-like) 314 367 IPR011009 -
Trre1g02165 519 PANTHER - 48 364 - -
Trre1g02165 519 Pfam Legume lectin domain 28 261 IPR001220 GO:0030246
Trre1g02165 519 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Trre1g02165 519 SUPERFAMILY Protein kinase-like (PK-like) 369 495 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02165 Trre-Chr1 17272992 17274962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02165 369 487 Receptor kinase-like Gene Family AT3G45390 37.190 1.36e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02165 Lectin_legB 2.4e-57 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02165 - - tpra:123883598 530.791