Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02163 ATGAATTATTCTGGACGTGCTTTTTACAAAAAGCCATACACAATTTGGAACAAAAACAAAATTGCTTCTTTCAACACAACTTTTGTTCTCAACATAGGTCCTCAAACTTCCCCTGGTGGAGAAGGAATAGCTTTTATCTTAGCTTCAGATAAAACTCTCCCTGAAAACAGTGATGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTCGATACACGACAGAGTTCAACCGAAGACGGTCCAAACAACCATGTTGGAATCAATATAAACAGCATATCTTCATTGAAACAAGCATCATTATCAAACACTAAGGTGAATCTTTCATCTGGTATAAATGTAACTATGAGAATTGAATATTTCAATGATGTAATATCTGTTTTTGGTTCAATGACTGTGAATTCACAAGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTCTTATCTTAAACAAGAGGTTTATGTTGGATTCTCTGCTTCAACAAGCAATTACACAGAGCTAAACTGTGTGAGAGCATGGGAATTCAATGGTGTAGATATTGGTAGTAAAAGAAATCTATTGTGGATTTGGATTATAATTCCATTGGTAATAATCATAAGTGGATTAGTCTTTTTCATGGTATATTTTCTAAGGAAAAGAAACATGGAGATTCAAGAAGATATGTATCCGAGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCTAAGAAATATAAACTAAAGGAATTGATGAAAGCAACAGGTGGATTCAGCCTTCAAAACAAACTTGGTGAAGGTGGATTTGGAACGGTTTATAAGGATATTTTTTACAATGGTAAATTGGGAGATTTTGGATTAGCGCGTACAATTCAAAAGAGAAATGAAACTCATCACTCAACAAAGGAAATTGCGGGGACACCAGGTTATATGGCACCAGAAACATTTCTTACAGGAAGAGCAACAATTGAAACAGATGTGTATGCTTTTGGTGTACTTGTTTTGGAAGTTGTGTGTGGAAAAAGACCGGGGAATATGTATGCACAAGATGATTATAAAAATAGTATTGTCTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGCGCCGTGGATAAAAGGATAAGTAATGATGAGAATGAGATTGAGAGGGTTAAATGGGAAGAAAAAGAAGTTGACATTGAAAGGGTAAAATTGGAGGAAGAAATTGAAATTGTGCTTATTCTTGGTTTGGCTTGTTGTCATCCGAATCCAAATCAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAATGGAGAAATTTCTCCTCCAAATGTTCCATTGGATAGACCTGCTTTTGTTTGGCCAGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGATCTCTCACTCCATTCACTCAACTTAGTGGCAGATAG 1470 0.3619 MNYSGRAFYKKPYTIWNKNKIASFNTTFVLNIGPQTSPGGEGIAFILASDKTLPENSDGQWLGIVNASTNGTSRAAILAVEFDTRQSSTEDGPNNHVGININSISSLKQASLSNTKVNLSSGINVTMRIEYFNDVISVFGSMTVNSQDSMETLLVSPPLNLSSYLKQEVYVGFSASTSNYTELNCVRAWEFNGVDIGSKRNLLWIWIIIPLVIIISGLVFFMVYFLRKRNMEIQEDMYPRIEDQIQHSSMAPKKYKLKELMKATGGFSLQNKLGEGGFGTVYKDIFYNGKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATIETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSIVYWVWELYGKGEIVSAVDKRISNDENEIERVKWEEKEVDIERVKLEEEIEIVLILGLACCHPNPNQRPSMKTVLMVLNGEISPPNVPLDRPAFVWPAMPSSFKEGEDNSLINGSLTPFTQLSGR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02163 489 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 193 IPR013320 -
Trre1g02163 489 FunFam Probable L-type lectin-domain containing receptor kinase S.5 1 200 - -
Trre1g02163 489 Pfam Legume lectin domain 4 194 IPR001220 GO:0030246
Trre1g02163 489 Gene3D - 1 200 - -
Trre1g02163 489 ProSiteProfiles Protein kinase domain profile. 62 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02163 489 SUPERFAMILY Protein kinase-like (PK-like) 288 465 IPR011009 -
Trre1g02163 489 SMART serkin_6 267 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02163 489 Pfam Protein kinase domain 290 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g02163 489 SUPERFAMILY Protein kinase-like (PK-like) 253 288 IPR011009 -
Trre1g02163 489 Coils Coil 393 413 - -
Trre1g02163 489 Gene3D Transferase(Phosphotransferase) domain 1 270 458 - -
Trre1g02163 489 CDD lectin_legume_LecRK_Arcelin_ConA 4 192 IPR001220 GO:0030246
Trre1g02163 489 PANTHER - 287 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02163 Trre-Chr1 17260780 17262618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02163 284 458 Receptor kinase-like Gene Family AT5G55830 40.000 1.13e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre1g02163 Lectin_legB 1.4e-55 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02163 - - tpra:123883598 420.624