LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g02162	ATGTCTTTGCTGCTTAAATATCAATTATTAGCAACCATATTCACTATCATATCCATTACAAAAATTAGTTGCTATTATTTCAATTTCCCAACCTTCCAACCAAATGATGAATATTCCAATTTGTTACTAAGCAAAAACTCAAAAATATACTTAGATGCTATCCAAGTAACCCCAGATATTCGTGGTGAAATAATGAATTATTCTGGACGTGCTTTTTACAAAAAGCCATACACAATTTGGAACAAAAACAAAATTGCTTCTTTCAACACAACTTTTGTTCTCAACATAGGTCCTCAAACTTCCCCTGGTGGAGAAGGAATAGCTTTTATCTTAGCTTCAGATAAAACTCTCCCTGAAAACAGTGATGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTCGATACACGACAGAGTTCAACCGAAGACGGTCCAAACAACCATGTTGGAATCAATATAAACAGCATATCTTCATTGAAACAAGCATCATTATCAAACACTAAGGTGAATCTTTCATCTGGTATAAATGTAACTATGAGAATTGAATATTTCAATGATGTAATATCTGTTTTTGGTTCAATGACTGTGAATTCACAAGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTCTTATCTTAAACAAGAGGTTTATGTTGGATTCTCTGCTTCAACAAGCAATTACACAGAGCTAAACTGTGTGAGAGCATGGGAATTCAATGGTGTAGATATTGGTAGTAAAAGAAATCTATTGTGGATTTGGATTATAATTCCATTGGTAATAATCATAAGTGGATTAGTCTTTTTCATGGTATATTTTCTAAGGAAAAGAAACATGGAGATTCAAGAAGATATGTATCCGAGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCTAAGAAATATAAACTAAAGGAATTGATGAAAGCAACAGGTGGATTCAGCCTTCAAAACAAACTTGGTGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGGAAACAATAAAGAGATAGCTGTGAAGAGAGTCTCGAAGAATTCGCGTCAAGGAAAGCAAGAATTTATAGCTGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTAGTGAAACTCATCGGTTGGTGCTACGAAAGCAAGGAGCTTCTCCTTGTTTACGAGTTTATGCCTCGGGGAAGTTTAGATAAATACTTATTTAACCAATCAAGTGAATTAGAAGTACAATATTCAAAAGTACTTGATTGGAAGACAAGAAGTAGCGTGATTCGTGATGTCGCCCAAGCATTGGATTATCTTCACAATGGATGTGAAAAAAGAGTGCTTCATAGAGACATTAAAGCAAGCAACATAATGTTAGATATTTTTTACAATGGTAAATTGGGAGATTTTGGATTAGCGCGTACAATTCAAAAGAGAAATGAAACTCATCACTCAACAAAGGAAATTGCGGGGACACCAGGTTATATGGCACCAGAAACATTTCTTACAGGAAGAGCAACAATTGAAACAGATGTGTATGCTTTTGGTGTACTTGTTTTGGAAGTTGTGTGTGGAAAAAGACCGGGGAATATGTATGCACAAGATGATTATAAAAATAGTATTGTCTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGCGCCGTGGATAAAAGGATAAGTAATGATGAGAATGAGATTGAGAGGGTTAAATGGGAAGAAAAAGAAGTTGACATTGAAAGGGTAAAATTGGAGGAAGAAATTGAAATTGTGCTTATTCTTGGTTTGGCTTGTTGTCATCCGAATCCAAATCAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAATGGAGAAATTTCTCCTCCAAATGTTCCATTGGATAGACCTGCTTTTGTTTGGCCAGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGATCTCTCACTCCATTCACTCAACTTAGTGGCAGATAG	2031	0.358	MSLLLKYQLLATIFTIISITKISCYYFNFPTFQPNDEYSNLLLSKNSKIYLDAIQVTPDIRGEIMNYSGRAFYKKPYTIWNKNKIASFNTTFVLNIGPQTSPGGEGIAFILASDKTLPENSDGQWLGIVNASTNGTSRAAILAVEFDTRQSSTEDGPNNHVGININSISSLKQASLSNTKVNLSSGINVTMRIEYFNDVISVFGSMTVNSQDSMETLLVSPPLNLSSYLKQEVYVGFSASTSNYTELNCVRAWEFNGVDIGSKRNLLWIWIIIPLVIIISGLVFFMVYFLRKRNMEIQEDMYPRIEDQIQHSSMAPKKYKLKELMKATGGFSLQNKLGEGGFGTVYKGILGNNKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYESKELLLVYEFMPRGSLDKYLFNQSSELEVQYSKVLDWKTRSSVIRDVAQALDYLHNGCEKRVLHRDIKASNIMLDIFYNGKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATIETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSIVYWVWELYGKGEIVSAVDKRISNDENEIERVKWEEKEVDIERVKLEEEIEIVLILGLACCHPNPNQRPSMKTVLMVLNGEISPPNVPLDRPAFVWPAMPSSFKEGEDNSLINGSLTPFTQLSGR	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g02162	676	Pfam	Protein kinase domain	332	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g02162	676	Coils	Coil	580	600	-	-
	Trre1g02162	676	Gene3D	Transferase(Phosphotransferase) domain 1	407	635	-	-
	Trre1g02162	676	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	316	406	-	-
	Trre1g02162	676	PANTHER	-	55	633	-	-
	Trre1g02162	676	CDD	lectin_legume_LecRK_Arcelin_ConA	27	256	IPR001220	GO:0030246
	Trre1g02162	676	SUPERFAMILY	Concanavalin A-like lectins/glucanases	23	256	IPR013320	-
	Trre1g02162	676	Gene3D	Phosphorylase Kinase; domain 1	305	406	-	-
	Trre1g02162	676	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	24	264	-	-
	Trre1g02162	676	CDD	STKc_IRAK	337	631	-	-
	Trre1g02162	676	Gene3D	-	24	263	-	-
	Trre1g02162	676	FunFam	Lectin-domain containing receptor kinase A4.3	407	648	-	-
	Trre1g02162	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Trre1g02162	676	ProSiteProfiles	Protein kinase domain profile.	331	645	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g02162	676	ProSitePatterns	Protein kinases ATP-binding region signature.	337	359	IPR017441	GO:0005524
	Trre1g02162	676	Pfam	Legume lectin domain	27	258	IPR001220	GO:0030246
	Trre1g02162	676	SUPERFAMILY	Protein kinase-like (PK-like)	313	629	IPR011009	-
	Trre1g02162	676	SMART	serkin_6	331	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g02162	Trre-Chr1	17260780	17262810	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g02162	68	645	Receptor kinase-like Gene Family	AT5G55830	38.003	5.75e-119	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Trre1g02162		Pkinase	5.8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g02162	-		-	tpra:123883598	1046.96