Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02160 ATGGTTAAGGCTGGATTTGCCGGAGATGATGCACCCAGGGCTGTGTTTCCTAGCATTGTTGGTCGTCCACGTCACACCGGTGTGATGGTTGGTATGGGACAAAAGGATGCATATGTTGGTGATGAAGCTCAATCAAAAAGGGGTATTTTGACTCTAAAGTATCCAATTGAACATGGAATAGTTAGTAATTGGGATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAGTTGCGTGTGGCTCCGGAAGAACATCCCGTTCTTCTCACTGAAGCACCGCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAAATTATGTTTGAGACCTTCAACACTCCTGCTATGTATGTCGCTATTCAGGCCGTGCTTTCACTTTATGCCAGTGGTCGTACTACCGGTATTGTTCTTGATTCCGGAGATGGTGTCAGCCACACAGTTCCTATCTATGAAGGCTACGCCCTCCCACATGCGATCCTGCGTTTGGATCTTGCAGGCCGTGATCTCACAGATGCCCTGATGAAAATCTTAACCGAACGTGGATACTCTTTTACCACTTCAGCCGAGCGTGAAATTGTGAGGGATGTGAAGGAAAAACTAGCCTACATTGCTCTTGATTATGAACAAGAGCTAGAAACCTCAAAGACAAGCTCAGCTGTTGAGAAGAGCTACGAGTTACCTGATGGACAGGTGATCACAATAGGCTCTGAACGGTTCCGTTGTCCCGAAGTACTTTTCCAGCCGTCGATGGTTGGTATGGAAGCTGCTGGTATACATGAAACAACATACAATTCAATCATGAAGTGTGATGTTGATATTAGGAAAGATTTGTATGGAAACATTGTATTGAGTGGTGGTACAACTATGTTCCCCGGCATTGCTGATCGGATGAGCAAAGAGATATCAGCATTGGCACCAAGTAGCATGAAAATTAAGGTGGTTGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCTCTCAGTACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGTCCTTCAATTGTTCACAGGAAATGCTTCTAA 1083 0.446 MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02160 360 Gene3D - 123 323 - -
Trre1g02160 360 FunFam Actin, alpha skeletal muscle 314 360 - -
Trre1g02160 360 FunFam Actin, alpha skeletal muscle 239 313 - -
Trre1g02160 360 Pfam Actin 2 360 IPR004000 -
Trre1g02160 360 PRINTS Actin signature 34 45 IPR004000 -
Trre1g02160 360 PRINTS Actin signature 100 113 IPR004000 -
Trre1g02160 360 PRINTS Actin signature 221 237 IPR004000 -
Trre1g02160 360 PRINTS Actin signature 11 20 IPR004000 -
Trre1g02160 360 PRINTS Actin signature 125 144 IPR004000 -
Trre1g02160 360 PRINTS Actin signature 46 68 IPR004000 -
Trre1g02160 360 FunFam Actin, alpha skeletal muscle 1 162 - -
Trre1g02160 360 ProSitePatterns Actins and actin-related proteins signature. 89 101 IPR020902 -
Trre1g02160 360 Gene3D - 1 354 - -
Trre1g02160 360 ProSitePatterns Actins signature 1. 38 48 IPR004001 -
Trre1g02160 360 CDD NBD_sugar-kinase_HSP70_actin 59 166 - -
Trre1g02160 360 FunFam Actin, muscle 165 256 - -
Trre1g02160 360 SUPERFAMILY Actin-like ATPase domain 132 360 IPR043129 -
Trre1g02160 360 ProSitePatterns Actins signature 2. 341 349 IPR004001 -
Trre1g02160 360 Gene3D Actin; Chain A, domain 4 165 256 - -
Trre1g02160 360 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Trre1g02160 360 SMART actin_3 1 360 IPR004000 -
Trre1g02160 360 PANTHER ACTIN 5 353 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02160 Trre-Chr1 17240992 17242823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02160 1 360 Cytoskeleton Gene Families AT3G12110 97.778 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02160 K10355 - sly:101260631 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02160 1 17240992 17242823 Trre1g02160 1 17240992 17242823 ECH
Trre13g03658 13 44167945 44170304 Trre1g02160 1 17240992 17242823 PCT