Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02158 ATGTTTTCTTGGTTAACAAGATTAGTTTCATCGTGCTTGAGACCAGTGAGAAGGTATGCACGTATGAACAAAGATATTGAAAATGATTTTGATGTATCTTCAACATCTGAAGATGCTCTTGTTTGGTGTAAAGACCTTGAGAAACACTCATGTGGTGAATTCTCTTTTGCTATTGTTCAAGCTAATGAAGTAATTGAAGATCATAGTCAAGTTGAAACTGGTTCTGATTCTGTCTTTGTTGGTGTTTATGATGGACATGGTGGTCCTGATGCTTCTCGGTTTGTTAATGATCATCTCTTTAATCATCTCATCAGCATTGCAAAAGAAAATGATTCTATCTCCGAAGATATTATAAGGAATGCTGTTACTGCTACGGAGGATGGATTTATGAATCTTGTTCGAAGGAGCTTCGGAATAAAGCCACTAATAGCAGCAATGGGTTCTTGTTGTCTTGTTGGTGTTATCTGGAAAGGGACATTATATATCGCTAATCTTGGAGACTCTCGAGCTGTGATCGGTTCAATTGGTCGATCTAACAAAATCGTTGCTAAACAGTTGACCAAAGAGCACAATGCCTGCAAAGCAGATATCAGAAGAGAACTTAGGTCTTTGCATCCAGAAGATTCGCAAATTGTTGTTATGAAACATGGAACATGGCGCATTAAAGGCATCATCCAGGTATCAAGATCTATAGGAGATGCATATTTGAAACGGCCGGAGTTTTCCTTTGATCCATCATTCCCGAAGTTCCACTTGTCTGATCCTATCCGCCGACCGGTTCTATCAGCAGAACCATCTATATGTTCAATAGTTTTACAACCTAATGATAAATTCGTTATATTTGCATCTGACGGCCTTTGGGAACACATGACAAATCAGGAAGCTGTTGAGATTGTTCATAGCAACCCTAGAACTGGAATTGCAAGAAGACTTCTTCAGAATGCTTTGAATGAGGCAGCAAGGAAAAGGGAAATGAGATATAAAGATCTGCTGAAGGTCGAAAAAGGGATTAGGCGATTTTTCCACGATGATATCACTGTCGTTGTTATCTTCATCGACCACGAGTTGCAAAATCAGAATGTTAATGTTCCTGAGTTATCCATAAAAGGTTTTATCGACACAGTTGGACCATCAAATTTTAGAAGTTTCCAAGAAATGCAATGA 1164 0.3866 MFSWLTRLVSSCLRPVRRYARMNKDIENDFDVSSTSEDALVWCKDLEKHSCGEFSFAIVQANEVIEDHSQVETGSDSVFVGVYDGHGGPDASRFVNDHLFNHLISIAKENDSISEDIIRNAVTATEDGFMNLVRRSFGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSIGRSNKIVAKQLTKEHNACKADIRRELRSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPKFHLSDPIRRPVLSAEPSICSIVLQPNDKFVIFASDGLWEHMTNQEAVEIVHSNPRTGIARRLLQNALNEAARKREMRYKDLLKVEKGIRRFFHDDITVVVIFIDHELQNQNVNVPELSIKGFIDTVGPSNFRSFQEMQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02158 387 PANTHER PROTEIN PHOSPHATASE 39 350 IPR015655 GO:0004722|GO:0006470
Trre1g02158 387 FunFam Probable protein phosphatase 2C 42 44 360 - -
Trre1g02158 387 CDD PP2Cc 60 352 IPR001932 -
Trre1g02158 387 SMART PP2C_4 33 350 IPR001932 -
Trre1g02158 387 Pfam Protein phosphatase 2C 66 321 IPR001932 -
Trre1g02158 387 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Trre1g02158 387 Gene3D - 20 363 IPR036457 -
Trre1g02158 387 SUPERFAMILY PP2C-like 60 353 IPR036457 -
Trre1g02158 387 ProSiteProfiles PPM-type phosphatase domain profile. 53 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02158 Trre-Chr1 17236793 17240002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02158 1 383 PP2C-type Phosphatase Gene Family AT5G06750 67.775 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02158 K01102 - gmx:100778238 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02158 1 17236793 17240002 Trre1g02158 1 17236793 17240002 ECH
Trre1g02158 1 17236793 17240002 Trre7g04643 7 54237865 54244619 ECH