Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02151 ATGGACGCCCGCAAGCGTGGAAGGCTTGACGCTTCCGTCAACGTTAACGGCTCCGTCAAGAAAACAAAACAAGAAATGGACTCTTTATCAAGTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGCCCATTCGGTGAGGGTTGTCACTTCTTGCATTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATTTAAAATCTGCTGCACCTCCTAGAAATGTTGCTGCGCCACCACCAGTCTCTAACAATGGTTCTGCACCACATGTTGTTAAAAGCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAACCTTATACTCCATCAATTGATGATCACCGTCCTATGGCACCCACAACAGTTAATCGTATGGCTGTTCGAACAGAGGCTCCTTCTGGTCTGGGCACTACTAGCTTTGGTGCCAATTCTACTGCCAAGATTAGTGTAGAAGCTGCCTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTACTTCTGACTCTATCAGCGTCTGCCCCACCTAAATCCACCACAGGTGTTCCTGGTGCCCCAGCCCAACCTGCAAGAAACATCAAGACCAAGCTGTGTGAGAATTTCGCTAAAGGATCTTGTACATTTGGAGAAAAATGTCACTTTGCCCATGGAGCTGCTGAATTGCGCAAGCTAGGAATCTAA 888 0.4561 MDARKRGRLDASVNVNGSVKKTKQEMDSLSSGVGSKTKPCTKFFSIAGCPFGEGCHFLHYVPGGYNAVAQMMNLKSAAPPRNVAAPPPVSNNGSAPHVVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPYTPSIDDHRPMAPTTVNRMAVRTEAPSGLGTTSFGANSTAKISVEAALAGAIIGKGGVNSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSASAPPKSTTGVPGAPAQPARNIKTKLCENFAKGSCTFGEKCHFAHGAAELRKLGI 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02151 295 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Trre1g02151 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Trre1g02151 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Trre1g02151 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Trre1g02151 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Trre1g02151 295 SMART c3hfinal6 100 125 IPR000571 GO:0046872
Trre1g02151 295 Gene3D - 259 292 - -
Trre1g02151 295 Gene3D - 93 130 - -
Trre1g02151 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Trre1g02151 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 286 IPR000571 GO:0046872
Trre1g02151 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Trre1g02151 295 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 151 IPR045877 GO:0003729
Trre1g02151 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 237 IPR036612 GO:0003723
Trre1g02151 295 Gene3D K Homology domain, type 1 164 258 IPR036612 GO:0003723
Trre1g02151 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Trre1g02151 295 SMART kh_6 167 237 IPR004087 GO:0003676
Trre1g02151 295 MobiDBLite consensus disorder prediction 1 31 - -
Trre1g02151 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Trre1g02151 295 MobiDBLite consensus disorder prediction 15 31 - -
Trre1g02151 295 FunFam Zinc finger CCCH domain-containing protein 94 130 - -
Trre1g02151 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Trre1g02151 295 CDD KH-I_AtC3H36_like 171 236 - -
Trre1g02151 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Trre1g02151 295 FunFam Zinc finger CCCH domain-containing protein 256 292 - -
Trre1g02151 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02151 Trre-Chr1 17172911 17177743 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g02151 KH_1 7.9e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02151 - - pvu:PHAVU_007G259300g 466.077