Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02150 ATGGCGTCTAAAGGTCCAAGGTCTAAGGTTGATCATGAGTATAAAGCTAAACGGCAAAAGGCTGTTGAAGCTCCACGGGAGCCTAGACGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCCAAGGATGTTAAAAAATTTTGGACAAAAATAGAAAAGCTGGTTCTTTACAAGCATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTGGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTCATACACCAGCAGAGAAAATTTCTGCAGAGCATCATATGAGTATTCAATGCAAAGATATAGACGGAGACATTATCAATGAACCTAAGGAAGCCAATGTTGAGTATCAATCCGATGCACCTGATCAGGATGAAGAATATGATATACAATCTGATGATGTATCGGATGATGACGAGCAAACCCTCGAGGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAAAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGGCAAAGCATGAAAGTAGTCCGGAGTGTAGTGAAGATGGTGGAAAAATAGTTAGAACTGGTGATGCTGTTGATCAGGAAGAACTATTATCAGAAAATGGAGATCTATCTATCACAAAAATAGGTACAAACGACTCCAGCATGATCGCTGGTCGACGTTGTGATGACAGTAATGGTGATGCATCTACACCAACAAACGATCTATCTCAAAATGATGATCATCAATCTGAAAATCTTGAAGAGGTTCCCAGTGAGACTGCCAAAGAAAATGCCCCATTTGATTTTTCTGATGAAGAGGAAGATGGCGACTTTTTGTCTGGCACTGAGGATAAGGATGACGAAACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATGCAATTGATCCAAAGGATGAGATTGCATTACTACAAAAAGAGAGTGACATGCCAGTTGAGGAACTGCTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGATGAGTCAGATTATGCTTCTGCTTCATCAGAAGATCATCAGAACTCACCAGTCCATGATGATGCTGAGCAGAAGGATCCAGCTATTTCTATGGATGTAGATATGAAATCCAGTGAGCAACTAGCTACCATACAAACTCAGGCAGAAGAACAGGGGGAAGCACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACCGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACTATTATGACTATAGCATTGCTTGCACATCTTGCCTGTGAAAAGGGGATCTGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTAAAATGGTGTCCTGCATTTAAAATTTTGACCTATTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCCCACCTCATTAAAAACTGGAAATCACAACGGTGGCAGACATTGTTGAATTTCAATGCAAAACGACGGATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCACGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAAGAGGTTGTTGATCGTCTGCATAATGTCCTTCGTCCGTTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAGTTGAGCATGTCATATTCTGTAGGCTTTCAAAGAGACAGAGAAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAACGCCAATTTTTTTGGAATGATTGGTGTTATCATGCAACTTCGCAAGGTTTGTAATCATCCTGACCTATTTGAGGGCCGTCCAATCGTCAGTTCTTTTGATATGTGTCCGATTGATATTCAGTTAAGCTCTTCTATTTGCTCCATGCTTTTGCCTAGCACCTTTTCAACGGTTGACTTAGAAGGTTTGGGTCTTTTATTTACTCATCTTGATTATGGCATGACTTCGTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTGCTACTTTAATTATGGAACGGACTGATATGGCTGAACTGGAAGTAATTAAGCCTGGATTGAAATGTCAGAAAAAGCCTCATGGAACAAACATTTTTGAAGAGATTCAAAGGGCAATTTGGGAGGAGAGGATAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACTTCGTTACCATAAGGCATCCTGTATATGATATTCATCAACAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCAGACATCGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCTGCTGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACTACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCTCCACTATTGTCACCAATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAACTGCAGGAGCTAGCAATTTTGCTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAATTTGTATGGTTATACTTACATGCGGTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACTAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACGGTTATTTTTTATGATAGTGACTGGAATCCTGCCATGGATCAACAAGCTCAAGATCGGTGCCACAGAATTGGCCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGAGCACTTGATGATTTAGTTATACAAAGTGGGGGTTATAATACCGAGTTCTTCAAGAAGCTTGATCCTATGGAACTGTTTTCAGGTCATAAAACACTTTCAATTAAAGACACGCCTAAGGAGAAAAGCCAGAACAGTGGAGAAGTTTCTGTAACTAATGCAGATGTGGAAGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCACTAAAGAAAGTTGAACTGGAAGAAGCTGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGACTATGTAAATGAGGATGATGAGCCTCAAGAATTAGGTGAATCTGTTTCCACTTTGAATAAAGAGAATGCATTAGTGCTAAATGGAGGTGATCATAAGGAAGATAAACCACCCTTTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTCAAACAGATGGCAGAAGCTGCAGCTGCAGCTGGACAGGCTTTATCGGCCTTTGAAAATGAGCTACGCCCTATTGACCGATATGCAATTCGTTTTCTAGAGATGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGACACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAGGCCGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACGGCTTACCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACTCAAAGAGGAAGCTGAAGAAGAGAAAAAGAGGACTCAGGCACCAAGTGATTTGAAACCCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTAAGCTCTGGCTTAAGAAATGTGAAAGACGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGTTGCCACTAGTCTTGATTTTGTGTCTCCAAGTTCAAGTATACATAAAAAGCGCAAGAAGTCTAAATTAACAACTGGTGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGACCCTCATGACATTTATGATTCAGATTTAGACTCCAACTCATTAGATATGCAGCAGGATGATCATGCAGAATCAGATCCATGTAAAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGAAGGAGTAAGATGGGAGGAAAAGTATCCATCACTCCAATGCCTGTGAAGCGGGTCTTTATGATAAAATCAGAAAAGTTGAAGAAGGGAAATATTTGGTACAAAGATTGTATTCCATCAGCAGATTTTTGGCTGCCTCAGGAGGATGCAGTATTATGTGCAGCTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGATATACTTCACAGCATGACTGCTGGTGGGGCATATAAGGGAATATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTATTCCAAAAATATGTCTTGTTCTCTATGGACAATGCAAATCATGAGAAAATCAACAATACATGCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAATATTCGAATGTTGTTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTATGCATTGATTTCTTGTGTCTGGAAAGCGGCACATGTTGACCGTAGACAAAATCTACATGCCACTTGCAACGGTCTCTATTTCGACCAGAGTTTCTTCTCTTCAATTGGCCAGCGTTCACAAAATCCCCGGAACAAACCCTCTGAAAGGATGACGTTTGCTAATTCGGCCCAGAGCAAAATGTTATTGGCCGCCGCACTGGATGACTTGGGAAGTAGGCCAGAGAATGACAAAATAGTCCTCTCTAACCAGGGTAAAAACATGCCGGTGACTGAAGATCAGGCGGATATAACTCTGGAGTTCCCAATAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAATGGGATGAAGCACCACCTTCTATAAATAAGCACACAAGGAATGATCATCTCAAAAGTAGTTTCTCTACTGTTGAGAATCGTTTCAGGGAGGTAACAAAAGCTTGTGAAGAAGACAGTTCTCGATGGGCTTCATCAGCATTCCCAACAAATGATGCAAGGTCTCGACCTGGATCCAGGTTACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGACGTTATTAAGCCATCTAGATCAAAGAACAAAAGACCATCAGTGGATTCTAGTGAATTGCATCGCCATCAGACTGAGCCATTATTCCCGCCAATGCCGTCGCTTCACGAACTGACTTTGGATCAACCTTCATCTACGGTGGACAAATTTGGATTTGACATGATGAGCGATTTCCCCTTTGATTTGAATGGGGAAAGTTCACTGGAAAGGGAAAATTTTGGAGTGGTCCCACATGATTATGTACCTGAGTTAATCTCAGGCCTTGATGATTGTTCCACATTCCCTGAATATACTGATATTAGATAA 6141 0.4105 MASKGPRSKVDHEYKAKRQKAVEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHTPAEKISAEHHMSIQCKDIDGDIINEPKEANVEYQSDAPDQDEEYDIQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKGELAKHESSPECSEDGGKIVRTGDAVDQEELLSENGDLSITKIGTNDSSMIAGRRCDDSNGDASTPTNDLSQNDDHQSENLEEVPSETAKENAPFDFSDEEEDGDFLSGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDGDQEDESDYASASSEDHQNSPVHDDAEQKDPAISMDVDMKSSEQLATIQTQAEEQGEAPCENSEERESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNAKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKVEHVIFCRLSKRQRNLYEDFIASSETQATLANANFFGMIGVIMQLRKVCNHPDLFEGRPIVSSFDMCPIDIQLSSSICSMLLPSTFSTVDLEGLGLLFTHLDYGMTSWESDEVQAIETPATLIMERTDMAELEVIKPGLKCQKKPHGTNIFEEIQRAIWEERIREAKERAAAIAWWNSLRCKKRPIYSTTLRDFVTIRHPVYDIHQQKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHKTLSIKDTPKEKSQNSGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDDYVNEDDEPQELGESVSTLNKENALVLNGGDHKEDKPPFVVAKEDDVDMLADVKQMAEAAAAAGQALSAFENELRPIDRYAIRFLEMWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKKRTQAPSDLKPKPKKKPKKAKFKSLKKGSLSSGLRNVKDELRAVPMAIDDDVATSLDFVSPSSSIHKKRKKSKLTTGGEEEKRFKKSKKYKRDPHDIYDSDLDSNSLDMQQDDHAESDPCKSLVVLEQKTVGRSKMGGKVSITPMPVKRVFMIKSEKLKKGNIWYKDCIPSADFWLPQEDAVLCAAVHEYGPNWSFVSDILHSMTAGGAYKGIYRHPVHCCERFRELFQKYVLFSMDNANHEKINNTCSGKALKVTEDNIRMLLDVASEQANRELLLQKHFYALISCVWKAAHVDRRQNLHATCNGLYFDQSFFSSIGQRSQNPRNKPSERMTFANSAQSKMLLAAALDDLGSRPENDKIVLSNQGKNMPVTEDQADITLEFPIEESDSLSSFPSVIKLSIKWDEAPPSINKHTRNDHLKSSFSTVENRFREVTKACEEDSSRWASSAFPTNDARSRPGSRLQSSGKQRSSISDVIKPSRSKNKRPSVDSSELHRHQTEPLFPPMPSLHELTLDQPSSTVDKFGFDMMSDFPFDLNGESSLERENFGVVPHDYVPELISGLDDCSTFPEYTDIR 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02150 2046 Coils Coil 1451 1475 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1466 1483 - -
Trre1g02150 2046 Gene3D - 1644 1704 - -
Trre1g02150 2046 Coils Coil 1400 1420 - -
Trre1g02150 2046 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Trre1g02150 2046 Pfam SNF2-related domain 536 808 IPR000330 GO:0005524|GO:0140658
Trre1g02150 2046 PANTHER HELICASE SRCAP-RELATED 15 1942 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1295 1309 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1913 1979 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1950 1968 - -
Trre1g02150 2046 Coils Coil 215 235 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 347 370 - -
Trre1g02150 2046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 696 IPR014001 -
Trre1g02150 2046 Gene3D - 488 764 IPR038718 -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g02150 2046 Gene3D - 1034 1278 IPR027417 -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 251 279 - -
Trre1g02150 2046 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X3 765 825 - -
Trre1g02150 2046 SMART ultradead3 515 708 IPR014001 -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 189 214 - -
Trre1g02150 2046 CDD DEXQc_SRCAP 519 741 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1282 1311 - -
Trre1g02150 2046 CDD SF2_C_SNF 1049 1184 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 462 481 - -
Trre1g02150 2046 Gene3D - 765 842 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 311 325 - -
Trre1g02150 2046 SMART bromneu2 23 94 IPR014012 -
Trre1g02150 2046 SMART helicmild6 1090 1173 IPR001650 -
Trre1g02150 2046 FunFam Photoperiod-independent early flowering 1 489 764 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1545 1590 - -
Trre1g02150 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 1240 IPR027417 -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 285 299 - -
Trre1g02150 2046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 741 IPR027417 -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 251 441 - -
Trre1g02150 2046 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1031 1280 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1466 1499 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1913 1949 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 371 413 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 186 214 - -
Trre1g02150 2046 MobiDBLite consensus disorder prediction 1532 1590 - -
Trre1g02150 2046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1064 1214 IPR001650 -
Trre1g02150 2046 Pfam HSA domain 27 93 IPR014012 -
Trre1g02150 2046 Pfam Helicase conserved C-terminal domain 1063 1173 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02150 Trre-Chr1 17151969 17168970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02150 539 811 RAD5 or RAD16-like Gene Family AT5G43530 29.814 1.35e-27 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g02150 SNF2_N 1.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02150 K11661 - gmx:100794898 3140.52