Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02140 ATGTTTGCTTCTAGTGGATCATCAGTTTCAAATAAAACAAGAACAATATGGACTCATGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCCGAGAAGGCGACACCAAAAGCTATATTAAGGCTGATGGATTCAGATGGATTAACTATAATCCATGTTAAATATCATTTGAAGAAATATAGAATTGCAATGGCAGAACTAACTCAGGGGAAATCTGAAAAAAGAACTCATGTAGAGAATGTGCATCTTGATGTCAAATCTGGCTTCCAAATTAGAGAGGCACTTCAATTGCAACTAGATAGTCAGAGGCGTCTTCATGAACAACTAGAGATTCATAGAAATTTACAGTTGCAAATTGAGGAACAAGGAAGGCAGCTGAAGATGATGTATGAAAAGCATCATAGGATATGTAGTGGCCAGTTGAAAAGTGCATTATAA 450 0.3733 MFASSGSSVSNKTRTIWTHDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIIHVKYHLKKYRIAMAELTQGKSEKRTHVENVHLDVKSGFQIREALQLQLDSQRRLHEQLEIHRNLQLQIEEQGRQLKMMYEKHHRICSGQLKSAL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02140 149 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 69 IPR017930 -
Trre1g02140 149 FunFam Two-component response regulator 8 72 - -
Trre1g02140 149 Pfam Myb-like DNA-binding domain 17 65 IPR001005 -
Trre1g02140 149 Coils Coil 96 116 - -
Trre1g02140 149 Gene3D - 11 68 - -
Trre1g02140 149 Pfam MYB-CC type transfactor, LHEQLE motif 94 139 IPR025756 -
Trre1g02140 149 NCBIfam myb-like DNA-binding domain, SHAQKYF class 12 66 IPR006447 GO:0003677
Trre1g02140 149 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 143 IPR044848 GO:0003700
Trre1g02140 149 SUPERFAMILY Homeodomain-like 10 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02140 Trre-Chr1 17047407 17050505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02140 3 140 G2-like Transcription Factor Family AT3G04450 50.345 3.16e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g02140 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02140 - - gmx:102668541 213.001