Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02139 ATGTACATAAATCAATGGGAATTATCTCAACATCAAAGTTTTGAACCTTACAACATAATCACTCCTCTAGAAGCTATCATTCATGAATCAAATGCAAATGAAACTTACTATCATCATAATATTGACATTCCTATTTGGAACAATGAATTTTGCATGACAACAAAAATAGACTCACCTTCTTTGCTTTGTCAAGCCTCTAAAGAACAACCTACAACATCATTTCAATATGGTCTTGAATCTTTAATGTGTAGCAGTGATGAAGATAGTATTTCTTCTTCTGAAAAGTGTAGAAAATTTCCTAAGCCAATTATTTGTGAGGACTCTCAGTCTCCACAACAACATAGGAAGGTGTTGGAGGCTGATTCTTCTCCAGATAAAAATTCCATTGAAATTTCATTTCAGAGAACTCAGTTGGAATCATGTACAAATCAAGACAAGAAATCTTCTACTTGTGGCTTTGATTTTGCATCATCTAGCAACTCTGATTTTAAGAAAACATCAAAGGGTAAAAGAAGATTAAGATGGACAAAAGAATTGCATGAGTCATTTATTATGATTGTCAACCAGCTTGGTGGTCCAGAAAAGGCAAAGCCTAAGGCTATACTACAGATGATGGGTTTGGACAATATGCTCGCCATTTCTCATGTTAAAAGTCATTTGCAGAAATATCGTTCTACTTTACACACGCACAAAGCTTTGAAAGGAACATCTGAGGAAGAGCAGAGAACAAAAGGCATTAATGAGCTTCAAGTCAAAATCCAAATGCAAATAGAGGAATCACGACAACTGCAACTTGAGGTTGAAAGGACCAATCAACGACAATTGGAGTTGCAGGAAAATTTGCAACTGGTAATTGAACAGCAGAGGAAGCAACTCAAATCAATGTTATATCAACAAAAACAAAGAACCAAATTGGAGAATAATCTTGAAGCACCAAGTACTTGA 945 0.3513 MYINQWELSQHQSFEPYNIITPLEAIIHESNANETYYHHNIDIPIWNNEFCMTTKIDSPSLLCQASKEQPTTSFQYGLESLMCSSDEDSISSSEKCRKFPKPIICEDSQSPQQHRKVLEADSSPDKNSIEISFQRTQLESCTNQDKKSSTCGFDFASSSNSDFKKTSKGKRRLRWTKELHESFIMIVNQLGGPEKAKPKAILQMMGLDNMLAISHVKSHLQKYRSTLHTHKALKGTSEEEQRTKGINELQVKIQMQIEESRQLQLEVERTNQRQLELQENLQLVIEQQRKQLKSMLYQQKQRTKLENNLEAPST 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02139 314 Coils Coil 246 287 - -
Trre1g02139 314 Gene3D - 169 227 - -
Trre1g02139 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 151 305 IPR044848 GO:0003700
Trre1g02139 314 Pfam Myb-like DNA-binding domain 173 224 IPR001005 -
Trre1g02139 314 SUPERFAMILY Homeodomain-like 169 227 IPR009057 -
Trre1g02139 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 170 225 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02139 Trre-Chr1 17034806 17040025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02139 157 299 G2-like Transcription Factor Family AT4G28610 44.828 1.46e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g02139 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02139 - - psat:127115590 372.089