Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02137 ATGAGTTCTTGTTTTGTACCTTTTTCTTCTTCTTCTTCTTCACCACCTAACTCATCAACCACTGAGTTCCTTCATGGCTTAAAGTTTGGTCAAAAAATCTACTTTGAAGATGCAACAAGTGTTGTAACAGCTCAAAGTAGTAAACCATCAGCAATGGTTATGAAAAAAGGAACTCATTATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTTCTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCACGCATTCAAAATCTCCAACTGTTGTTGTCTCTGGTTTGGAGCAGAGATTTTGCCAACAGTGTAGCAGGTCAAATGTTCTTTAA 345 0.371 MSSCFVPFSSSSSSPPNSSTTEFLHGLKFGQKIYFEDATSVVTAQSSKPSAMVMKKGTHYPPRCQVEGCKVDLSGSKAYYSRHKVCCTHSKSPTVVVSGLEQRFCQQCSRSNVL 114
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02137 114 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g02137 114 Pfam SBP domain 64 112 IPR004333 GO:0003677
Trre1g02137 114 ProSiteProfiles Zinc finger SBP-type profile. 61 114 IPR004333 GO:0003677
Trre1g02137 114 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 110 IPR044817 GO:0003677
Trre1g02137 114 SUPERFAMILY SBT domain 61 112 IPR036893 GO:0003677|GO:0005634
Trre1g02137 114 Gene3D - 60 114 IPR036893 GO:0003677|GO:0005634
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g02137 Trre-Chr1 17006933 17007277 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02137 27 114 SBP-box Gene Family AT3G57920 61.364 8.94e-29 105
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre1g02137 SBP 3.3e-18 No_clan