Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02135 ATGAAGCATAATATGTTTCTTGATGCTATGTTTAGAGGATTTCTAGCTTATGTTATTCCAACCCTGAATTTGAAACCTTTTGCGCTTCCTGAATTCGATCAAGGAAAACGAAGTTGCCGCAGACGACTAGCTGGCCATAATGAAAGGCGAAGAAAGCACCAACCAACCTCTTTCTTAACCTCGCGTTTTCCCAGGCTCTCTCCACATACTCTTGATAACAATGGTAGAGGTCATAACTTTTTGATGGAATGTGGTTTGTACCCAAAGTTTTCTCCAAGAAATGCATTTCCAACTCCGAGAACATCCGAGCCAATTCCCGGTGATCAATCAACACAATTTACTTGGCAGAACCACTCATCGACACCATCCGATTTTTTCCTGCAAGGAACAGACTTCCACGGTCCTACTAGACATCCTCCTCCAATCGAAAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTCGAAACACAACAACGCCAAGTGTTGACATGAACAACTTGTTGAATTTCAACGGTTCGCTCATGACACAATCTCCTCAAGGTGCAGCCAATTATCAACTTGCAAATTCCTCTTGGTTTTTAAAAGGTGTTGATTCTCGTAACTGTATGTCGTCCGAAGATGTTCCTGATCTCGGTCTCGGTCAAACTTCACAGGCTATTATTCATAACGATCTTCGTAGCGAGCTTGATGTGTCACAAGGCAAGAAGCAATATTACGGGTCACTTCAAAACTTTTATGATTGA 777 0.4196 MKHNMFLDAMFRGFLAYVIPTLNLKPFALPEFDQGKRSCRRRLAGHNERRRKHQPTSFLTSRFPRLSPHTLDNNGRGHNFLMECGLYPKFSPRNAFPTPRTSEPIPGDQSTQFTWQNHSSTPSDFFLQGTDFHGPTRHPPPIENYNEVTDSSCALSLLSNQTWYSRNTTTPSVDMNNLLNFNGSLMTQSPQGAANYQLANSSWFLKGVDSRNCMSSEDVPDLGLGQTSQAIIHNDLRSELDVSQGKKQYYGSLQNFYD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02135 258 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 185 IPR044817 GO:0003677
Trre1g02135 258 MobiDBLite consensus disorder prediction 42 68 - -
Trre1g02135 258 ProSiteProfiles Zinc finger SBP-type profile. 1 53 IPR004333 GO:0003677
Trre1g02135 258 SUPERFAMILY SBT domain 28 58 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02135 Trre-Chr1 16999134 17000418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02135 29 249 SBP-box Gene Family AT2G42200 32.046 7.02e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre1g02135 SBP 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02135 - - gmx:100807165 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02135 1 16999134 17000418 Trre1g02135 1 16999134 17000418 ECH
Trre13g03595 13 43615238 43618206 Trre1g02135 1 16999134 17000418 PCT