Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02134 ATGGAAGGAGGGTACCACGGCGGAAATCCGACTTTGGGTGTTGTAGTGCTGTTTCATCAGCTTCCTGAATTCGATCAAGGAAAACGAAGTTGCCGCAGACGACTAGCTGGCCATAATGAAAGGCGAAGAAAGCACCAACCAACCTCTTTCTTAACCTCGCGTTTTCCCAGGCTCTCTCCACATACTCTTGATAACAATGGTAGAGGTCATAACTTTTTGATGGAATGTGGTTTGTACCCAAAGTTTTCTCCAAGAAATGCATTTCCAACTCCGAGAACATCCGAGCCAATTCCCGGTGATCAATCAACACAATTTACTTGGCAGAACCACTCATCGACACCATCCGATTTTTTCCTGCAAGGAACAGACTTCCACGGTCCTACTAGACATCCTCCTCCAATCGAAAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTCGAAACACAACAACGCCAAGTGTTGACATGAACAACTTGTTGAATTTCAACGGTTCGCTCATGACACAATCTCCTCAAGGTGCAGCCAATTATCAACTTGCAAATTCCTCTTGGTTTTTAAAAGGTGTTGATTCTCGTAACTGTATGTCGTCCGAAGATGTTCCTGATCTCGGTCTCGGTCAAACTTCACAGGCTATTATTCATAACGATCTTCGTAGCGAGCTTGATGTGTCACAAGGCAAGAAGCAATATTACGGGTCACTTCAAAACTTTTATGATTGA 753 0.4369 MEGGYHGGNPTLGVVVLFHQLPEFDQGKRSCRRRLAGHNERRRKHQPTSFLTSRFPRLSPHTLDNNGRGHNFLMECGLYPKFSPRNAFPTPRTSEPIPGDQSTQFTWQNHSSTPSDFFLQGTDFHGPTRHPPPIENYNEVTDSSCALSLLSNQTWYSRNTTTPSVDMNNLLNFNGSLMTQSPQGAANYQLANSSWFLKGVDSRNCMSSEDVPDLGLGQTSQAIIHNDLRSELDVSQGKKQYYGSLQNFYD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02134 250 Pfam SBP domain 18 44 IPR004333 GO:0003677
Trre1g02134 250 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 176 IPR044817 GO:0003677
Trre1g02134 250 SUPERFAMILY SBT domain 18 50 IPR036893 GO:0003677|GO:0005634
Trre1g02134 250 ProSiteProfiles Zinc finger SBP-type profile. 1 45 IPR004333 GO:0003677
Trre1g02134 250 MobiDBLite consensus disorder prediction 35 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02134 Trre-Chr1 16999134 17001828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02134 4 221 SBP-box Gene Family AT2G42200 33.077 6.91e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre1g02134 SBP 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02134 - - gmx:100807165 258.455