Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02132 ATGGCTCTCAACTCTTCTACATTCACTGACGATGAACTTTTACGACCATTCCTCTACAACAAAATTCATAATATACCTTTGCCCAATTATATCAACATTCTTGAACAAGATTTGTTCGGTACTGTAAAAAACCCTTGGGAAATTTGGGAAGAGTTTAAGGATTCTCATTCATATTGTGGAAAAGACATATATGTTTTCAGTATCTTAAGGAAGAAATCTGCCACTAGCACACGCGTAGTTCGCACTATTGGAATTGGTGCATGGGAAGGTGAAGATACCGGAAAAAGTATATTCGCCAAAGATACAAATCGACTCCTCGGTATAAGAAAACGTTATCGGTTTGAGAAGAGTGCTTATGAACATGGTGGATGGATCTTGCACGAGTATAGCCTTGACAAATCTTTAATAACCAATCCTTCGGCAAAGAATTATGTTCTATGCAGATTTAGGAAGAACTTGAAACGGGGTCTACAAAATACAGAAACAAGAATTTATCACCAACCCAATTCACACATAACAAATTGCAGTGATGTACCAAGAAAAAAACCAAGAATGAACAATGTTGGACAAGATAGATCACAAAGAAAGACCGTTGCCGTTCCTCCATGTGCGGCAGCAACAACCACCATATCTGGCAAGACTACTTTGTTGAGAAAATATATAATTTATGAAGAACCAAGAAAGGAATCAAACACAACAAATGTGGTTAATACAAATACAAATTCTCAATATAAGGAAGAAAAAGGTGTGGAAAATAATTGCCAAGAGACCATCGTTATTGGACTAGAGGCTATCGCCAATTCTGAGAACAATAGTGTTTGGTTGGAGGAAAATATTGGCCAAAAATCAAGAAATCAACTTGACAGTGAAAATAACAAGACTGATGCTGTTAGAAGTACTAATGAAGCAGAGCACGAATTTAACAAAGATGTTGAATGCACTATGAACAAAGAAGATGATGGTGATATCATTATAAACAATGATAATGATCTTATTATGAGCAAAGAAGAGGGTTGTGTCACTATGTCCTGGCCTGAGCTTTTTGCACAGGGGCTGTTAAAGAAGAACGAAGGATGCTTGATCAAAGAAGAAGATGTTCCAATGCTTTCCAATGATTTTTATAAGGATTTATTGTTTGAAAAATATAAATATTAG 1155 0.3593 MALNSSTFTDDELLRPFLYNKIHNIPLPNYINILEQDLFGTVKNPWEIWEEFKDSHSYCGKDIYVFSILRKKSATSTRVVRTIGIGAWEGEDTGKSIFAKDTNRLLGIRKRYRFEKSAYEHGGWILHEYSLDKSLITNPSAKNYVLCRFRKNLKRGLQNTETRIYHQPNSHITNCSDVPRKKPRMNNVGQDRSQRKTVAVPPCAAATTTISGKTTLLRKYIIYEEPRKESNTTNVVNTNTNSQYKEEKGVENNCQETIVIGLEAIANSENNSVWLEENIGQKSRNQLDSENNKTDAVRSTNEAEHEFNKDVECTMNKEDDGDIIINNDNDLIMSKEEGCVTMSWPELFAQGLLKKNEGCLIKEEDVPMLSNDFYKDLLFEKYKY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02132 384 MobiDBLite consensus disorder prediction 288 304 - -
Trre1g02132 384 Gene3D NAC domain 9 155 IPR036093 GO:0003677|GO:0006355
Trre1g02132 384 SUPERFAMILY NAC domain 9 150 IPR036093 GO:0003677|GO:0006355
Trre1g02132 384 ProSiteProfiles NAC domain profile. 1 152 IPR003441 GO:0003677|GO:0006355
Trre1g02132 384 PANTHER NAC TRANSCRIPTION FACTOR 56 9 211 - -
Trre1g02132 384 Pfam No apical meristem (NAM) protein 9 131 IPR003441 GO:0003677|GO:0006355
Trre1g02132 384 MobiDBLite consensus disorder prediction 169 200 - -
Trre1g02132 384 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02132 Trre-Chr1 16991423 16994115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02132 9 153 NAC Transcription Factor Family AT5G62380 33.548 1.66e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre1g02132 NAM 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02132 - - tpra:123896066 422.935