Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02130 ATGATGATCATCAACAACACTTCTAGTGTTTCTTCTTCACCTCATTTTCATCATCATCAACAAAGTTCTGTTCTTCAAAATGACAACAACAACAACAACAACAACAATTTTCTTTCTTCTGTTCATCATCATCCAAAAACAAACAATCAGACACAAGGCCGCATCTTGAAAATCACCTTCTTTTTGTCTTCTGCTCGTAATCTTAACAATAATAATGCTCCTGTTATTGTTGATGATGATGATGATCATGGTGGAAAACAACAACAACAGAAGATGAAATCTTTTTCATGCCATTTTTGTAACAAATCTTTTTCATCAAACAAAGCTTTGAACGGCCACATGAGATCGCATACTCAAAAGGGTTTTAAGAAAATTACTACTACTGCATCATCATCATCTTCTTCGTTGTTGGAATTGGAACAGAACAAGAAGAGGAATCATCATCATCATCATCAAGATCATGATCAGTTACCACCGGCTATTGACTTGTCGAATTATTTGCCTCCAAGAACATACAAGACCAATAAACGGTGCAACAGATTTTTTAATGACGATGATGCTCGTATCGCTGCTCAAGCATTGTTGGATATGTCTCGCGGAAAGTTTCTGAGTTTCGATGATTATGATGTGAATAACTGTGACTGTAAAAGGATCAAGCTTTCGAATGAAGAAGAAAGGTAG 681 0.3583 MMIINNTSSVSSSPHFHHHQQSSVLQNDNNNNNNNNFLSSVHHHPKTNNQTQGRILKITFFLSSARNLNNNNAPVIVDDDDDHGGKQQQQKMKSFSCHFCNKSFSSNKALNGHMRSHTQKGFKKITTTASSSSSSLLELEQNKKRNHHHHHQDHDQLPPAIDLSNYLPPRTYKTNKRCNRFFNDDDARIAAQALLDMSRGKFLSFDDYDVNNCDCKRIKLSNEEER 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02130 226 MobiDBLite consensus disorder prediction 123 166 - -
Trre1g02130 226 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Trre1g02130 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Trre1g02130 226 Gene3D Classic Zinc Finger 90 118 - -
Trre1g02130 226 SUPERFAMILY beta-beta-alpha zinc fingers 93 120 IPR036236 -
Trre1g02130 226 SMART c2h2final6 95 117 IPR013087 -
Trre1g02130 226 FunFam GDNF-inducible zinc finger protein 1 92 119 - -
Trre1g02130 226 MobiDBLite consensus disorder prediction 1 51 - -
Trre1g02130 226 MobiDBLite consensus disorder prediction 123 139 - -
Trre1g02130 226 Pfam C2H2-type zinc finger 95 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02130 Trre-Chr1 16986174 16986854 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g02130 zf-C2H2_6 8.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02130 - K09228 cam:101497742 77.4109